xyang2uchicago / BioTIPLinks
BioTIP: Biological Tipping-Point Identification and Characterization
☆19Updated 2 weeks ago
Alternatives and similar repositories for BioTIP
Users that are interested in BioTIP are comparing it to the libraries listed below
Sorting:
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 3 weeks ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 8 months ago
- R package IReNA☆28Updated 7 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆26Updated 3 years ago
- ☆39Updated 3 years ago
- Single-Cell Inference of Class Switch Recombination☆19Updated 3 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 3 months ago
- ☆32Updated 5 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 5 months ago
- ☆20Updated last year
- Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data☆12Updated 3 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- ☆34Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated 9 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- Code associated with the data analysis for Miyoshi & Morabito 2024☆17Updated 6 months ago
- ☆20Updated last year
- ☆49Updated 10 months ago
- ☆9Updated 11 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- A modular tool for proportion analysis in single-cell sequencing data☆22Updated last month
- analysis script for GBM single cell RNA seq data☆18Updated 4 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆28Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- cell type specific, trait-associated gene regulation☆27Updated 2 months ago
- ☆15Updated 3 years ago
- ☆25Updated 3 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago