cytham / telomap
A tool to analyze telomeric reads from WGS or telobait-capture long-read sequencing data
☆9Updated 3 months ago
Alternatives and similar repositories for telomap:
Users that are interested in telomap are comparing it to the libraries listed below
- A long-read analysis toolbox for cancer and population genomics☆21Updated 10 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆15Updated 11 months ago
- FastK based version of Merqury☆22Updated last month
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆26Updated 4 months ago
- Haploidy and Size Completeness Estimation☆13Updated 9 months ago
- Improved Phased Assembler☆27Updated 2 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Scaffolding with assembly likelihood optimization☆20Updated 4 years ago
- transposable element typing pipeline☆17Updated 10 months ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆21Updated 4 months ago
- ☆20Updated 2 years ago
- An R package to infer and analyze synteny networks from protein sequences☆25Updated last month
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 4 years ago
- ☆24Updated last year
- ☆15Updated 7 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- ☆21Updated 5 months ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- ☆19Updated last year
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- Yet another Hi-C scaffolding tool☆18Updated 2 months ago
- a broadly applicable tool for automated gene identification and retrieval☆30Updated last month
- Command line tool to plot genomic coverage from a BAM file☆13Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated 3 weeks ago
- A tool for recovering synteny blocks from multiple alignment☆29Updated 3 years ago
- Fast in-silico normalization algorithm for NGS data☆22Updated 3 years ago