cytham / telomapLinks
A tool to analyze telomeric reads from WGS or telobait-capture long-read sequencing data
☆9Updated 9 months ago
Alternatives and similar repositories for telomap
Users that are interested in telomap are comparing it to the libraries listed below
Sorting:
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆23Updated 10 months ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 2 weeks ago
- A short tandem repeat (STR) genotyping and analysis toolkit for long reads☆13Updated last month
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆40Updated 3 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- ☆26Updated 3 years ago
- ULTRA Locates Tandemly Repetitive Areas☆29Updated 2 months ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- convert a blast output to a bed file☆12Updated 10 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆42Updated 9 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Frequently used commands in Bioinformatics☆21Updated 6 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 3 weeks ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 2 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- Command line tool to plot genomic coverage from a BAM file☆13Updated 2 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆33Updated 2 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year