cmdoret / hicreppyLinks
Python reimplementation of hicrep with compatibility for sparse matrices
☆18Updated 2 years ago
Alternatives and similar repositories for hicreppy
Users that are interested in hicreppy are comparing it to the libraries listed below
Sorting:
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- Architectural stripe detection from 3D genome conformation data☆18Updated 2 years ago
- Blazing fast toolkit to work with .hic and .cool files☆31Updated this week
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Updated 2 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 3 years ago
- Python library for processing and visualizing Hi-C data☆20Updated 5 years ago
- Genome-wide contact analysis using sklearn☆68Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- A Python implementation for BH-FDR and HiCCUPS☆50Updated 3 months ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆29Updated last year
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 3 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆15Updated 3 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆15Updated this week
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆11Updated 4 years ago
- Lightweight converter between hic and cool contact matrices.☆73Updated last year
- Universal RObust Peak Annotator☆16Updated last year
- R package to evaluate the reproducibility of Hi-C data☆26Updated 2 years ago
- Processing and plotting tools for genomics data☆21Updated 2 weeks ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆71Updated last year
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆74Updated 6 months ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆73Updated 2 weeks ago
- Python bindings to UCSC BigWig and BigBed library☆33Updated 3 months ago
- ☆23Updated 5 years ago
- A GAN-based method for Enhancing Hi-C data☆33Updated 4 years ago