cmdoret / hicreppyLinks
Python reimplementation of hicrep with compatibility for sparse matrices
☆18Updated 2 years ago
Alternatives and similar repositories for hicreppy
Users that are interested in hicreppy are comparing it to the libraries listed below
Sorting:
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- Architectural stripe detection from 3D genome conformation data☆18Updated last month
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- Genome-wide contact analysis using sklearn☆69Updated last year
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- Blazing fast toolkit to work with .hic and .cool files☆40Updated last week
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆15Updated 3 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Updated this week
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Updated 2 years ago
- Python library for processing and visualizing Hi-C data☆20Updated 5 years ago
- Lightweight converter between hic and cool contact matrices.☆74Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets