dadrasarmin / enrichment_analysis_for_non_model_organismLinks
In this repo, I explain how can we use clusterProfiler and Tidyverse to perform (GO or KEGG) enrichment analysis in R.
☆22Updated 2 years ago
Alternatives and similar repositories for enrichment_analysis_for_non_model_organism
Users that are interested in enrichment_analysis_for_non_model_organism are comparing it to the libraries listed below
Sorting:
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆33Updated 2 months ago
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆20Updated 3 years ago
- Sorting and subsampling phylogenomic datasets☆25Updated 5 months ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Transposable Elements MOvement detection using LOng reads☆24Updated last month
- read and analyse RepeatMasker output☆25Updated 2 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆29Updated 7 months ago
- Computational Analysis of Gene Expression Evolution☆43Updated last month
- HyPhy standalone analyses☆46Updated last month
- tutorial on pggb☆35Updated 8 months ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 6 months ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆39Updated last year
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆43Updated last year
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆48Updated 3 weeks ago
- Codes for the lettuce resequencing project in 2020☆30Updated 4 years ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- Genome Annotation Without Nightmares☆46Updated 7 months ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆58Updated this week
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 8 months ago
- my bin directory☆45Updated 2 weeks ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆32Updated 5 months ago
- perSVade: personalized Structural Variation detection☆40Updated 2 weeks ago
- ☆26Updated 7 months ago
- ☆29Updated last year
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 6 years ago
- Scripts and procedures for detecting positively selected genes and codons in primates☆21Updated 4 years ago