A toolkit to design standard primers, multiplexed primers, and primers around SV's
☆13Oct 29, 2022Updated 3 years ago
Alternatives and similar repositories for PrimerTK
Users that are interested in PrimerTK are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multiplex Primer Design☆12May 3, 2020Updated 5 years ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants☆47May 21, 2017Updated 8 years ago
- GUI for batch primer design with graphical output for PCR and SNP detection☆17Jun 28, 2018Updated 7 years ago
- Multiplex Primer Design☆22Oct 30, 2020Updated 5 years ago
- Design primers for species-specific qPCR☆10Jun 1, 2017Updated 8 years ago
- R Shiny application "Vaccine Designer" aiming for the construction of vaccine sequences based on multi epitope design workflow.☆10Jun 25, 2024Updated last year
- Bayesian-based fetal genotyping using maternal cell-free DNA and parental sequencing data.☆14Jun 5, 2019Updated 6 years ago
- PrimerServer2: a high-throughput primer design and specificity-checking platform☆81Dec 5, 2022Updated 3 years ago
- NGS-PrimerPlex is a high-throughput tool for mupltiplex primer design☆69May 26, 2025Updated 9 months ago
- A easy-to-use Python API for Primer3 primer design.☆16Nov 10, 2022Updated 3 years ago
- Renames headers in FASTA file☆12Jun 28, 2017Updated 8 years ago
- ☆11May 26, 2023Updated 2 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 11 months ago
- Software for Ontogenic aNalysis of Antibody Repertoires☆19Sep 25, 2025Updated 5 months ago
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- Code for design of diagnostic PCR primers, and metabarcoding markers.☆63Nov 7, 2023Updated 2 years ago
- Simple oligo analysis and primer design☆190Jan 26, 2026Updated last month
- Synteny Mapping and Analysis Program☆30Mar 11, 2026Updated last week
- ⛏ HLA predictions from NGS shotgun data☆55Jun 6, 2025Updated 9 months ago
- DegenPrimer is a tool to check the quality of degenerate primers by simulating PCR☆17May 12, 2022Updated 3 years ago
- CNV screening and annotation tool☆25Oct 31, 2016Updated 9 years ago
- 用每个窗口的read数作为特征、胎儿浓度作为标签,训练神经网络模型;训练完成的神经网络模型可用于NIPT胎儿浓度的预测☆11Jun 10, 2022Updated 3 years ago
- A utility for splitting mixed origin NGS reads☆10Jun 1, 2021Updated 4 years ago
- Command line tool to plot genomic coverage from a BAM file☆14Apr 5, 2023Updated 2 years ago
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Mar 16, 2026Updated last week
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 3 years ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Dec 24, 2024Updated last year
- Automatically design multiplex PCR primer pairs for diverse templates☆33May 23, 2024Updated last year
- Fast python code to merge paired-end reads☆13Oct 29, 2021Updated 4 years ago
- Forensic analysis tool useful in backwards computing information from next-generation sequencing data.☆11Jan 20, 2026Updated 2 months ago
- NGSphy: phylogenomic simulation of next-generation sequencing data☆14Mar 9, 2018Updated 8 years ago
- FxTools: a comprehensive toolkit for FASTA and FASTQ file manipulation☆31Feb 16, 2022Updated 4 years ago
- Python library for simple and complex indels.☆12Jan 22, 2024Updated 2 years ago
- In-silico PCR, primer design and padlock design for in-situ sequencing☆53Feb 26, 2026Updated 3 weeks ago
- SANEFALCON (Single reAds Nucleosome-basEd FetAL fraCtiON): Calculating the fetal fraction for noninvasive prenatal testing based on genom…☆14Jun 5, 2020Updated 5 years ago
- ☆15May 1, 2025Updated 10 months ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Nov 20, 2019Updated 6 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Jun 9, 2023Updated 2 years ago