stjude / PrimerTKLinks
A toolkit to design standard primers, multiplexed primers, and primers around SV's
☆13Updated 3 years ago
Alternatives and similar repositories for PrimerTK
Users that are interested in PrimerTK are comparing it to the libraries listed below
Sorting:
- 🍶 Genome assembly with short sequence reads☆25Updated 2 years ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆17Updated 8 months ago
- SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data☆20Updated 4 years ago
- The shiny app that accompanies the ngsReports R package☆13Updated 4 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆29Updated last year
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 8 years ago
- Nanopore Real-Time Analysis Tool☆16Updated last year
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 4 years ago
- ☆51Updated 6 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- Functions to compare a SV call sets against a truth set.☆30Updated 7 months ago
- Minor Variant Calling and Phasing Tools☆15Updated 4 years ago
- Split a BAM file by haplotype support☆16Updated 8 years ago
- Master of Pores 2☆23Updated last year
- full taxonomer cython repository☆22Updated 6 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Immuological gene typing and annotation for genome assembly☆38Updated 10 months ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- ☆16Updated last year
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆25Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- ☆33Updated 3 years ago
- fastq quality assessment and filtering tool☆18Updated 3 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Updated 6 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 3 weeks ago