Construct a Physical Map from Linked Reads
☆20Apr 1, 2026Updated 6 months ago
Alternatives and similar repositories for physlr
Users that are interested in physlr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Jun 7, 2024Updated 2 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Aug 11, 2026Updated last month
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 6 years ago
- Deep learning embedding for nucleotide sequences☆20Mar 12, 2026Updated 6 months ago
- Components of genome sequence assembly tools☆21Mar 30, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Apr 1, 2026Updated 6 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Apr 20, 2026Updated 5 months ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆56Feb 6, 2024Updated 2 years ago
- A Rust implementation of sliding window stats over fastas.☆15Jun 4, 2026Updated 4 months ago
- Simple library/pipeline to generate and handle Hi-C data.☆42Sep 14, 2026Updated 3 weeks ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- AStarix: Fast and Optimal Sequence-to-Graph Aligner☆74Dec 25, 2021Updated 4 years ago
- ☆12Dec 6, 2023Updated 2 years ago
- (check out instaGRAAL for a faster, updated program!) This program is from Marie-Nelly et al., Nature Communications, 2014 (High-qualit…☆15Nov 22, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated 2 years ago
- a string to graph aligner☆41Jul 5, 2016Updated 10 years ago
- Pangenome-based structural variation caller☆37Sep 24, 2026Updated 2 weeks ago
- QuickEd is a high-performance exact sequence alignment based on the bound-and-align paradigm.☆31May 5, 2025Updated last year
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 7 months ago
- De Bruijn graph representation in low memory☆36Jul 6, 2024Updated 2 years ago
- Error correction of long reads☆16Jan 30, 2026Updated 8 months ago
- ☆42May 19, 2025Updated last year
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a …☆37Apr 20, 2022Updated 4 years ago
- Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…☆27Sep 16, 2026Updated 3 weeks ago
- viralFlye pipeline☆19Aug 12, 2024Updated 2 years ago
- Automated pipeline for enrichment analysis in non-model organisms !☆17Feb 8, 2026Updated 8 months ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆21Aug 17, 2026Updated last month
- recompute GFA link overlaps☆26Sep 14, 2022Updated 4 years ago
- Correction of palindromes in long reads from PacBio and Nanopore☆14Mar 1, 2022Updated 4 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Assemble the Genome in a Bottle sequencing data☆10Aug 4, 2017Updated 9 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆56May 17, 2022Updated 4 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- Tool for unsupervised contig binning from viral metagenomes☆18Oct 22, 2021Updated 4 years ago
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago