Alternatives and similar repositories for ramdaq

Users that are interested in ramdaq are comparing it to the libraries listed below

• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆27Updated last year
• yachielab / FRACTAL
  FRACTAL: framework for distributed computing to trace large accurate lineages
  ☆24Updated 2 years ago
• alevar / ORFanage
  Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…
  ☆28Updated 3 weeks ago
• fukunagatsu / RIblast
  RIblast is ultrafast RNA-RNA interaction prediction software based on seed-and-extension algorithm for comprehensive lncRNA interactome a…
  ☆17Updated 2 years ago
• yachielab / SPADE
  ☆14Updated 2 years ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆31Updated 3 years ago
• seqeralabs / nf-chai
  POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction
  ☆11Updated 4 months ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆40Updated 3 weeks ago
• dbikard / genomenotebook
  A genome browser in your Jupyter notebook
  ☆31Updated 3 weeks ago
• mmcco / RepeatScout
  The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…
  ☆15Updated 2 years ago
• gsneha26 / urWGS
  Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5
  ☆20Updated 11 months ago
• biocorecrg / MOP2
  Master of Pores 2
  ☆23Updated 6 months ago
• bbglab / openvariant
  Read, parse and operate different multiple input file formats with OpenVariant
  ☆12Updated last week
• ulelab / ultraplex
  Ultra-fast 5' and 3' demultiplexer
  ☆27Updated last year
• nf-core / proteinfamilies
  Generation and update of protein families
  ☆14Updated 2 weeks ago
• kensung-lab / INSurVeyor
  An insertion caller for Illumina paired-end WGS data.
  ☆23Updated 10 months ago
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated 2 years ago
• ponnhide / PySanger
  A Python module to analyze Sanger sequencing results.
  ☆24Updated last year
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆32Updated last year
• citiususc / BigSeqKit
  BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale
  ☆55Updated last year
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆32Updated 2 years ago
• mkpython3 / Mutation-Simulator
  A tool for simulating random mutations in any genome
  ☆38Updated last year
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆41Updated last year
• rraadd88 / beditor
  A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more
  ☆19Updated last year
• linsalrob / genbank_to
  Convert genbank files to a swath of other formats
  ☆18Updated last year
• wilkelab / Metagenomics_CAST
  Metagenomic search for novel CRISPR-transposons
  ☆12Updated 3 years ago
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆22Updated 7 months ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆34Updated 3 months ago
• foerstner-lab / gffpandas
  Parse GFF3 into Pandas dataframes
  ☆27Updated last year
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆33Updated 2 years ago