β14Mar 17, 2026Updated last week
Alternatives and similar repositories for ramdaq
Users that are interested in ramdaq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- β11Apr 22, 2022Updated 3 years ago
- π¬ Genotyping tool for genome-edited samples using nanopore-targeted sequencingβ14Feb 28, 2026Updated 3 weeks ago
- β14Dec 16, 2022Updated 3 years ago
- β13Jan 23, 2025Updated last year
- β18Jun 11, 2024Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancyβ16Mar 5, 2026Updated 2 weeks ago
- IntelliGenes: AI/ML pipeline for predictive analyses using multi-genomic profiles.β18Sep 4, 2024Updated last year
- lncRNA-Py is a development package for applying machine learning and deep learning to the problem of lncRNA classification, i.e. predictiβ¦β12Jan 24, 2025Updated last year
- β11Feb 2, 2026Updated last month
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples froβ¦β13Feb 13, 2023Updated 3 years ago
- An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyterβ14Jan 18, 2019Updated 7 years ago
- [Archived] SnakeMake pipeline to run BlobTools on public assembliesβ11Jul 3, 2023Updated 2 years ago
- CLI to automate Nextflow pipeline testingβ12Dec 15, 2025Updated 3 months ago
- Snakemake workflow for comparing E-G links to experimental dataβ23Mar 9, 2026Updated 2 weeks ago
- A whole-genome and alignment-free prokaryotic phylogeny toolβ23Mar 9, 2025Updated last year
- Correcting errors in noisy long reads using variation graphsβ50Nov 17, 2022Updated 3 years ago
- A place to gather useful information I keep on forgetting.β30Dec 3, 2025Updated 3 months ago
- β17Feb 11, 2026Updated last month
- Nextflow workflow for automatic repeat detection, classification and maskingβ13Feb 19, 2018Updated 8 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomesβ13Mar 12, 2024Updated 2 years ago
- A collection of Groovy classes that provide utility services to nextflow pipelines.β13Oct 25, 2022Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct outputβ32Jun 12, 2025Updated 9 months ago
- Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.β15Updated this week
- VueGen automates the creation of reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyβ¦β38Feb 10, 2026Updated last month
- Command line tool to plot genomic coverage from a BAM fileβ14Apr 5, 2023Updated 2 years ago
- A Nextflow pipeline for running synteny analysis.β16Jun 17, 2025Updated 9 months ago
- Generation and updating of protein familiesβ23Mar 13, 2026Updated last week
- VCF Observer is a VCF file analysis, comparison, and visualization tool.β18Jan 3, 2025Updated last year
- Stitch together Nanopore tiled amplicon data without polishing a referenceβ17Jan 29, 2024Updated 2 years ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogeniesβ82Updated this week
- Detect viral infection and integration sites on NGS input. Manuscript is in preparation.β10Jan 20, 2026Updated 2 months ago
- Assorted functions for performing numerical methods and solving common problems in systems biologyβ28Jan 8, 2025Updated last year
- β14Jan 31, 2026Updated last month
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performanceβ22Mar 8, 2024Updated 2 years ago
- Non-redundant pangenome assemblies from multiple genomes or binsβ15May 13, 2025Updated 10 months ago
- Python WSGI framework for developing matrix.org application-servicesβ10Oct 23, 2019Updated 6 years ago
- Script for generating PNG preview from asciicast JSON fileβ14Apr 13, 2022Updated 3 years ago
- Minimal scripts to reproduce the RADICL-seq analysis of the Nature Communications manuscriptβ11Jan 30, 2020Updated 6 years ago
- β16Jun 18, 2020Updated 5 years ago