rikenbit / ramdaqLinks
☆13Updated last month
Alternatives and similar repositories for ramdaq
Users that are interested in ramdaq are comparing it to the libraries listed below
Sorting:
- Python bindings for the TaxonKit library☆40Updated 3 months ago
- Parse GFF3 into Pandas dataframes☆30Updated last year
- Tool package to perform in-silico CRISPR analysis and assessment☆32Updated last week
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆23Updated last year
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Updated 2 weeks ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆35Updated last year
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆53Updated last year
- A tool for projecting genomic alignments to transcriptomic coordinates☆36Updated last year
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Updated 2 years ago
- Find common blocks and differences between DNA sequences☆42Updated 5 months ago
- Nail is an Alignment Inference tooL☆52Updated 2 weeks ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆24Updated 2 years ago
- Nanopore Plasmid Sequencing☆33Updated last year
- A Generative Pre-Trained Transformer Package for Pangenomes☆53Updated 4 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- A genome browser in your Jupyter notebook☆31Updated 4 months ago
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆19Updated 7 months ago
- POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction☆11Updated 8 months ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆54Updated last month
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- ☆27Updated 5 years ago
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆56Updated last month
- ☆15Updated 2 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25Updated 2 years ago
- A Quality Control filter and parser for NCBI BLAST XML results.☆17Updated 5 years ago
- ☆24Updated last year
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆36Updated 2 months ago
- Taxon Information Query - fast, offline querying of NCBI Taxonomy and related data☆59Updated last year