WenchaoLin / assemblyStatistics
A simple program for evaluate the assembly of a give genome.
☆18Updated 2 years ago
Alternatives and similar repositories for assemblyStatistics
Users that are interested in assemblyStatistics are comparing it to the libraries listed below
Sorting:
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- R package to draw syntenic plots in 3 different styles☆40Updated last year
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- Toolkit for evolutionary analyses of linkage groups☆31Updated 10 months ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 5 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated last month
- Easily construct the ML species tree with single-copy gene shared by different species.☆26Updated 6 years ago
- Pooled Sequencing Analysis for Sex Signal☆11Updated 3 years ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- ☆19Updated 2 years ago
- ☆20Updated 9 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆26Updated 2 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 3 months ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Yet another Hi-C scaffolding tool☆19Updated 6 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated last year
- Genome alignment and synteny plots☆30Updated last year
- Centromics: visualing centromeres with multiple omics data☆22Updated 2 months ago
- ☆23Updated last year
- A box of genomics tools☆21Updated 4 years ago
- ☆27Updated last month
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆30Updated 4 months ago
- ☆40Updated last year
- Genome Annotation Pipeline☆35Updated 8 months ago
- ☆12Updated 2 years ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆18Updated last year
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated 2 months ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated last year
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago