ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to amalgamate reads derived from the same DNA template into a consensus sequence.
☆20Sep 28, 2022Updated 4 years ago
Alternatives and similar repositories for ConsensusCruncher
Users that are interested in ConsensusCruncher are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reference-free duplex sequencing pipeline.☆19Oct 20, 2022Updated 4 years ago
- ☆36Mar 16, 2021Updated 5 years ago
- Deduplication for cfDNA sequencing data☆11Jul 5, 2017Updated 9 years ago
- A simplified pipeline for ctDNA sequencing data analysis☆38Sep 23, 2017Updated 9 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆19Apr 9, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A computational tool for processing and differentiating PCR duplicates from biological duplicates☆10Sep 20, 2018Updated 8 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- ☆12Oct 19, 2021Updated 5 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 4 years ago
- Barcoded Molecular Families☆22Nov 20, 2017Updated 8 years ago
- A standalone end-to-end data analysis pipeline for Duplex Sequencing☆23Oct 25, 2023Updated 3 years ago
- Mapping scheme test software, to be extended to sequence graphs.☆10Sep 28, 2022Updated 4 years ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆28Dec 16, 2021Updated 4 years ago
- ☆28Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Jul 13, 2018Updated 8 years ago
- The Exome Coverage and Identification Report displays the coverage of every target region in your capture design. It also displays regio…☆14Apr 22, 2015Updated 11 years ago
- 🛜 A lightweight immune repertoire browser☆28Dec 10, 2019Updated 6 years ago
- Command line tool to plot genomic coverage from a BAM file☆14Apr 5, 2023Updated 3 years ago
- 肿瘤突变负荷学习笔记（tumor mutation burden）☆17Dec 10, 2019Updated 6 years ago
- VarDict☆204Jan 5, 2024Updated 2 years ago
- An efficient Variant-Caller to highlight low allele-frequency tumor mutations in a clinical practice☆10Jun 5, 2023Updated 3 years ago
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data☆12Apr 25, 2023Updated 3 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Apr 25, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- ☆57Mar 31, 2020Updated 6 years ago
- VarDict Java port☆141Jan 5, 2024Updated 2 years ago
- ☆11Feb 18, 2019Updated 7 years ago
- Simplify snpEff annotations for interesting cases☆22Feb 18, 2019Updated 7 years ago
- an empirical Bayesian framework for mutation detection from cancer genome sequencing data☆31Apr 5, 2016Updated 10 years ago
- ☆23Sep 4, 2018Updated 8 years ago
- NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC☆18Aug 22, 2025Updated last year
- ☆11May 21, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆44Nov 20, 2019Updated 6 years ago
- Targeted Amplicon Bisulfite Sequencing Analysis Tool☆11May 8, 2019Updated 7 years ago
- A pipeline for primary analysis of shotgun metagenomic sequencing data☆11Jun 10, 2019Updated 7 years ago
- Predicting oncogenic potential of gene fusions☆12Feb 13, 2016Updated 10 years ago
- A bioinformatics tool for SV detection and virus integration discovery☆21Sep 12, 2017Updated 9 years ago
- Deduplication based on custom inline DNA barcodes.☆20Aug 17, 2018Updated 8 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆21Feb 20, 2021Updated 5 years ago