Reusable tools for working with next-generation sequencing (NGS) data
☆12Oct 7, 2024Updated 2 years ago
Alternatives and similar repositories for ngs-tools
Users that are interested in ngs-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SKERA - Deconcat PacBio reads☆10Oct 19, 2026Updated 2 weeks ago
- 💥 k-mer based variant calling and genotyping — sensitive, fast, and easy to use☆22Oct 12, 2026Updated 3 weeks ago
- Annotation and segmentation of MAS-seq data☆20May 25, 2023Updated 3 years ago
- ☆25Jul 15, 2026Updated 3 months ago
- ☆17Dec 4, 2025Updated 10 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆46Dec 8, 2025Updated 10 months ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated 2 years ago
- MGcount github repository☆14Jan 19, 2023Updated 3 years ago
- Single Cell Analysis of Five'Ends☆54Mar 19, 2024Updated 2 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 5 years ago
- A comprehensive toolkit for quality control and analysis of single-cell long-read RNA-seq data☆10Jun 3, 2026Updated 5 months ago
- Shell bootloader for data science.☆11Updated this week
- Code repository associated with our recent work: Spatial RNA-Sequencing of Microbiome-Host Interactions at One Micron Resolution☆10Jan 21, 2026Updated 9 months ago
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Code for "High-throughput and high-sensitivity full-length single-cell RNA-seq analysis on third-generation sequencing platform" paper. P…☆10Jun 21, 2024Updated 2 years ago
- R implementation of integration metrics for single-cell data☆14Sep 23, 2026Updated last month
- Database of virus RdRp barcode sequences☆11Sep 11, 2026Updated last month
- Suite of analysis tools for spatial total RNA-sequencing☆13Aug 10, 2023Updated 3 years ago
- [Pentest] miRanda: An miRNA target scanner that aims to predict mRNA targets for microRNAs using dynamic-programming alignment and therm…☆12Dec 30, 2022Updated 3 years ago
- Implementation of TriMap dimensionality reduction in PyTorch☆16May 26, 2018Updated 8 years ago
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 4 years ago
- SkewC a novel quality-assessment method to identify poor quality single-cells in scRNA-seq experiments. The method relies on the measure …☆11Aug 2, 2023Updated 3 years ago
- Computational workflow for virus genome reconstruction☆10Sep 17, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆10Apr 22, 2024Updated 2 years ago
- Virtual Embryo Challenge (VEC) local scorer: score a submitted .h5ad against the T1/T2/T3 metric panels, offline, against reference files…☆17Oct 15, 2026Updated 2 weeks ago
- Analysis of epigenetic data in Python☆15Updated this week
- Isoform-level spatial transcriptomics analysis☆19May 3, 2026Updated 5 months ago
- ☆16Feb 11, 2024Updated 2 years ago
- Data Analysis Process of "Single-cell and spatial transcriptomics reveal the molecular and histological mechanisms of radioresistance and…☆13Mar 29, 2025Updated last year
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale product…☆12Sep 9, 2025Updated last year
- automatically generates your project's coverage badge using the shields.io service, and then updates your README☆12Updated this week
- ARCHIVED: see viral-ngs repo☆10Jan 12, 2026Updated 9 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Scalable graph-regularized dimension reduction for million-cell and multi-section spatial transcriptomics via GraphPCA-Turbo☆13Aug 13, 2026Updated 2 months ago
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 3 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆12Jun 17, 2024Updated 2 years ago
- Code and analysis pipeline for NASC-seq.☆11Jun 14, 2022Updated 4 years ago
- Identification of viral RdRPs in single-cell RNA sequencing data☆15Mar 12, 2026Updated 7 months ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆57Oct 26, 2026Updated last week
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆33Jul 13, 2023Updated 3 years ago