Reusable tools for working with next-generation sequencing (NGS) data
☆12Oct 7, 2024Updated last year
Alternatives and similar repositories for ngs-tools
Users that are interested in ngs-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆22Mar 20, 2026Updated 3 weeks ago
- Annotation and segmentation of MAS-seq data☆20May 25, 2023Updated 2 years ago
- A shiny app for metacell analysis☆10Mar 26, 2026Updated 2 weeks ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆46Dec 8, 2025Updated 4 months ago
- Implementation of multiplex Leiden for analysis of spatial omics data☆18Apr 6, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- MGcount github repository☆14Jan 19, 2023Updated 3 years ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- Single Cell Analysis of Five'Ends☆50Mar 19, 2024Updated 2 years ago
- Shell bootloader for data science.☆10Updated this week
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 4 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- Suite of analysis tools for spatial total RNA-sequencing☆12Aug 10, 2023Updated 2 years ago
- SkewC a novel quality-assessment method to identify poor quality single-cells in scRNA-seq experiments. The method relies on the measure …☆10Aug 2, 2023Updated 2 years ago
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆13Jun 15, 2024Updated last year
- Identification of viral RdRPs in single-cell RNA sequencing data☆13Mar 12, 2026Updated last month
- ☆12Apr 29, 2024Updated last year
- ☆21Feb 27, 2026Updated last month
- automatically generates your project's coverage badge using the shields.io service, and then updates your README☆12Apr 6, 2026Updated last week
- ☆26Jan 29, 2026Updated 2 months ago
- A tool to use stereo-seq GEM and ssDNA to generate single-cell and 3D spatial resolved transtriptomics data☆14Oct 12, 2023Updated 2 years ago
- Bulk (CP/GZ) and single-cell Iso-Seq in the developing human brain☆16May 30, 2024Updated last year
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆14Dec 22, 2025Updated 3 months ago
- Implementation of TriMap dimensionality reduction in PyTorch☆16May 26, 2018Updated 7 years ago
- ☆11Dec 15, 2025Updated 3 months ago
- Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences☆11Jul 4, 2025Updated 9 months ago
- ☆10Apr 22, 2024Updated last year
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Jun 5, 2019Updated 6 years ago
- ☆16Feb 11, 2024Updated 2 years ago
- A list of bioinformatic tools for working with Ribo-Seq data☆21Apr 11, 2024Updated 2 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆32Jul 13, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- 在R语言中使用ChatGPT（中国大陆版）☆12Mar 17, 2023Updated 3 years ago
- MaxQuant and Perseus Bug Reporting☆10Mar 19, 2025Updated last year
- Code and analysis pipeline for NASC-seq.☆11Jun 14, 2022Updated 3 years ago
- Subplex Optimization Algorithm☆11Mar 23, 2026Updated 3 weeks ago
- ☆24Apr 6, 2026Updated last week
- A computation framework designed to detect differential junctions usage between two groups at single cell level☆13Feb 1, 2021Updated 5 years ago
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale product…☆12Sep 9, 2025Updated 7 months ago