Lioscro / ngs-tools
Reusable tools for working with next-generation sequencing (NGS) data
☆11Updated last month
Related projects ⓘ
Alternatives and complementary repositories for ngs-tools
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆36Updated last year
- Tutorial Website☆53Updated 3 years ago
- Single Cell Analysis of Five'Ends☆45Updated 8 months ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆23Updated 4 months ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆62Updated last week
- ☆24Updated 3 years ago
- ☆28Updated 5 months ago
- RiboPlotR package for Ribo-plot☆13Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆28Updated 3 years ago
- mutation(barcode) caller for 10x single cell data☆43Updated 4 years ago
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆29Updated last year
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated 6 months ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆50Updated 3 years ago
- Assessing the reproducibility of proccessed ChIP-seq peaks☆10Updated 3 years ago
- ☆27Updated 3 years ago
- interactive visualization of single-cell transcriptomes☆11Updated 10 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- ☆27Updated 3 months ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆24Updated 3 weeks ago
- ☆15Updated 2 months ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆40Updated 2 months ago
- Annotation and segmentation of MAS-seq data☆20Updated last year
- Use an ensemble of variant callers to call variants from ATAC-seq data☆22Updated 2 years ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- Analysis of Paired-Tag datasets☆39Updated 10 months ago
- ☆12Updated 5 years ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆14Updated 4 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆43Updated 8 months ago
- Updated DANPOS2 to work with python3☆20Updated 8 months ago