Lioscro / ngs-toolsLinks
Reusable tools for working with next-generation sequencing (NGS) data
☆12Updated 8 months ago
Alternatives and similar repositories for ngs-tools
Users that are interested in ngs-tools are comparing it to the libraries listed below
Sorting:
- ☆31Updated 4 months ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 10 months ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆27Updated last month
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆29Updated 4 years ago
- Single-cell Iso Prep☆16Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Detection and couting alternative TSS in single cells☆14Updated last year
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆19Updated 3 years ago
- RiboPlotR package for Ribo-plot☆15Updated last year
- scWGCNA☆60Updated 2 years ago
- Python package with CLI for the analysis of single cell methylation data.☆13Updated 7 months ago
- ☆32Updated 5 years ago
- ☆49Updated 10 months ago
- ☆44Updated this week
- Single Cell Analysis of Five'Ends☆50Updated last year
- ☆27Updated 7 months ago
- ☆34Updated 5 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 4 years ago
- single-cell clustering based on alternative splicing landscapes☆21Updated last year
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆43Updated 2 weeks ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆32Updated 3 years ago
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆31Updated 2 years ago
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆17Updated 2 months ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆30Updated last year
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆52Updated 3 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 6 months ago
- ☆32Updated 11 months ago