R package of colors for the Buenrostro Lab
☆91Aug 21, 2024Updated 2 years ago
Alternatives and similar repositories for BuenColors
Users that are interested in BuenColors are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆51Sep 1, 2023Updated 3 years ago
- Data/analysis repository for "Interrogation of human hematopoiesis..." paper☆21Jul 9, 2019Updated 7 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Feb 9, 2021Updated 5 years ago
- ☆11Nov 21, 2017Updated 8 years ago
- RcisTarget: Transcription factor binding motif enrichment☆50Mar 4, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Single Cell Analysis of Five'Ends☆54Mar 19, 2024Updated 2 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆321Apr 27, 2023Updated 3 years ago
- Inference of switch-like differential expression along single-cell trajectories☆23Oct 24, 2017Updated 9 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆181Jan 26, 2024Updated 2 years ago
- Platform-agnostic quantification of technical noise in single-cell RNA-seq. Supports ONT, PacBio/Kinnex, and short-read 10x / BD Rhapsody…☆13Sep 10, 2026Updated last month
- ☆10Apr 28, 2023Updated 3 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆42Nov 14, 2022Updated 3 years ago
- Fast Wilcoxon and auROC☆220Sep 20, 2026Updated last month
- ☆15Oct 19, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- RNA velocity estimation in R☆196Sep 14, 2023Updated 3 years ago
- Implementation of the matrixStats API for sparse matrices☆55Apr 2, 2025Updated last year
- Functional Inference of Gene Regulation☆56Jul 5, 2024Updated 2 years ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆468Feb 18, 2025Updated last year
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆43Jul 6, 2023Updated 3 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆203Aug 24, 2026Updated 2 months ago
- single nuclei RNA-seq analysis toolbox☆10Oct 26, 2016Updated 10 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆150Apr 5, 2024Updated 2 years ago
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆53Jul 12, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- DensityMap is perl tool for the visualization of features density along chromosomes☆19May 12, 2022Updated 4 years ago
- mgatk: mitochondrial genome analysis toolkit☆115Jul 8, 2026Updated 3 months ago
- chromatin Variability Across Regions (of the genome!)☆198May 1, 2026Updated 5 months ago
- nucleosome calling using ATAC-seq☆113Dec 20, 2020Updated 5 years ago
- Single-cell epigenomics analysis tools☆329Sep 12, 2026Updated last month
- STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data☆185Dec 18, 2021Updated 4 years ago
- Plot Protein: Visualization of Mutations☆14Nov 29, 2025Updated 11 months ago
- Epigenomics Program pipeline to analyze SHARE-seq data.☆23Mar 30, 2025Updated last year
- Publication Page for Satpathy*, Granja* et al 2019☆97Apr 29, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- <<------ Use SnapATAC!!☆26Mar 15, 2019Updated 7 years ago
- Benchmarking computational single cell ATAC-seq methods☆186Nov 30, 2020Updated 5 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆190Jul 13, 2020Updated 6 years ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆484Apr 11, 2026Updated 6 months ago
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆20Aug 12, 2025Updated last year
- Reconstructing single-cell lineage history using mitochondrial mutation drift dynamics☆13Aug 22, 2026Updated 2 months ago
- HMMRATAC peak caller for ATAC-seq data☆101Nov 12, 2024Updated last year