Alternatives and similar repositories for MULTI-seq:

Users that are interested in MULTI-seq are comparing it to the libraries listed below

• rpolicastro / scProportionTest
  ☆61Updated last year
• MarioniLab / EmbryoTimecourse2018
  Data and analysis scripts for our Embryo Timecourse paper.
  ☆68Updated 5 years ago
• AllonMKlein / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆85Updated 5 years ago
• single-cell-genetics / cellSNP
  Pileup biallelic SNPs from single-cell and bulk RNA-seq data
  ☆77Updated 2 years ago
• GreenleafLab / 10x-scATAC-2019
  Publication Page for Satpathy*, Granja* et al 2019
  ☆94Updated 4 years ago
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆64Updated 8 months ago
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆44Updated 4 years ago
• vib-singlecell-nf / vsn-pipelines
  A repository of pipelines for single-cell data in Nextflow DSL2
  ☆75Updated last year
• jon-xu / scSplit
  Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…
  ☆41Updated 2 years ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆73Updated 4 years ago
• Hoohm / CITE-seq-Count
  A tool that allows to get UMI counts from a single cell protein assay
  ☆82Updated 8 months ago
• elimereu / matchSCore2
  ☆54Updated 4 years ago
• cssmillie / ulcerative_colitis
  ☆60Updated 4 years ago
• cellgeni / STARsolo
  wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq
  ☆54Updated last week
• AllonKleinLab / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆37Updated 5 years ago
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆106Updated 2 months ago
• cellgeni / batchbench
  ☆46Updated 2 years ago
• chung-lab / SCAFE
  Single Cell Analysis of Five'Ends
  ☆48Updated last year
• gillislab / MetaNeighbor
  A method to rapidly assess cell type identity using both functional and random gene sets
  ☆38Updated 3 months ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆34Updated 5 years ago
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆100Updated 7 months ago
• statgen / popscle
  A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…
  ☆48Updated 3 years ago
• timoast / sinto
  Tools for single-cell data processing
  ☆123Updated 10 months ago
• cozygene / bisque
  An R toolkit for estimation of cell composition from bulk expression data
  ☆73Updated 3 years ago
• TheHumphreysLab / plot1cell
  ☆104Updated last month
• ncborcherding / utility
  Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
  ☆84Updated 9 months ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆99Updated last year
• PierreBSC / Viral-Track
  ☆57Updated 4 years ago
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆94Updated 3 years ago
• KChen-lab / Monopogen
  SNV calling from single cell sequencing
  ☆96Updated 5 months ago