chris-mcginnis-ucsf / MULTI-seqLinks
R implementation of MULTI-seq sample classification workflow
☆64Updated last year
Alternatives and similar repositories for MULTI-seq
Users that are interested in MULTI-seq are comparing it to the libraries listed below
Sorting:
- ☆71Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆79Updated 3 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆120Updated last week
- Tools for single-cell data processing☆125Updated last year
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 3 months ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆92Updated 3 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Mouse cell atlas☆60Updated 5 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 6 months ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆107Updated 4 months ago
- Detect doublets in single-cell RNA-seq data☆85Updated 6 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆105Updated 2 years ago
- Single Cell Cluster Evaluation☆95Updated 4 years ago
- R package for Pathway RespOnsive GENe activity inference☆106Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆103Updated 10 months ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- R package for semi-supervised single-cell data integration☆86Updated 2 months ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆83Updated 4 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆90Updated last year
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆84Updated 11 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- ☆41Updated last month
- Framework for sensitive DE testing (using neighbourhoods)☆70Updated last year
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆60Updated last month