chris-mcginnis-ucsf / MULTI-seqView external linksLinks
R implementation of MULTI-seq sample classification workflow
☆66Nov 22, 2023Updated 2 years ago
Alternatives and similar repositories for MULTI-seq
Users that are interested in MULTI-seq are comparing it to the libraries listed below
Sorting:
- Lineage Tracing by Integrating Mutation and Transcriptomic data☆13Jun 16, 2020Updated 5 years ago
- Detect doublets in single-cell RNA-seq data☆86Jul 3, 2019Updated 6 years ago
- ☆18Mar 12, 2024Updated last year
- Dynamical information enables inference of gene regulation at single-cell scale☆12Jun 9, 2025Updated 8 months ago
- Bead-based single-cell atac processing☆33Nov 13, 2021Updated 4 years ago
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆12Nov 14, 2020Updated 5 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Apr 26, 2022Updated 3 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆87Apr 23, 2025Updated 9 months ago
- Normalize CITEseq Data☆68Nov 9, 2025Updated 3 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Dec 14, 2023Updated 2 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆523Mar 21, 2025Updated 10 months ago
- R package for single-cell RNA-sequencing analysis☆15Sep 30, 2025Updated 4 months ago
- The source code and results of performance comparison on the detail of the process among scCATCH, CellAssign, Garnett, SingleR, scMap and…☆14Jan 8, 2023Updated 3 years ago
- manifold metric and correction techniques for (Bayesian) GPLVM from GPy☆12Mar 1, 2020Updated 5 years ago
- deMULTIplex2: robust sample demultiplexing for scRNA-seq☆17Feb 23, 2025Updated 11 months ago
- Population balance analysis☆44Apr 25, 2019Updated 6 years ago
- STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data☆179Dec 18, 2021Updated 4 years ago
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 6 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Mar 21, 2025Updated 10 months ago
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated last year
- R package for integrating and analyzing multiple single-cell datasets☆425Feb 4, 2026Updated last week
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆20May 22, 2021Updated 4 years ago
- kallisto index tag extractor☆20Jul 6, 2019Updated 6 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆312Nov 1, 2022Updated 3 years ago
- Pipeline for processing inDrops sequencing data☆76Oct 26, 2018Updated 7 years ago
- ☆21Mar 22, 2023Updated 2 years ago
- A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v…☆32Sep 14, 2020Updated 5 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Oct 27, 2022Updated 3 years ago
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 3 years ago
- Tools for processing UMI RNA-tag data☆131Mar 15, 2023Updated 2 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆23Aug 20, 2024Updated last year
- Marker Selection by matching manifolds and elastic net☆23Oct 22, 2024Updated last year
- Scripts used for "Comparing transcriptional dynamics of the epithelial-mesenchymal transition"☆18Aug 1, 2023Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58May 5, 2021Updated 4 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Jan 6, 2021Updated 5 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆321Apr 27, 2023Updated 2 years ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆19Apr 1, 2024Updated last year
- Repository to perform mapping of new datasets to the Human Lung Cell Atlas.☆20Jun 7, 2023Updated 2 years ago
- Fast Wilcoxon and auROC☆204Nov 8, 2024Updated last year