R implementation of MULTI-seq sample classification workflow
☆65Nov 22, 2023Updated 2 years ago
Alternatives and similar repositories for MULTI-seq
Users that are interested in MULTI-seq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Lineage Tracing by Integrating Mutation and Transcriptomic data☆13Jun 16, 2020Updated 5 years ago
- ☆18Mar 12, 2024Updated 2 years ago
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆13Nov 14, 2020Updated 5 years ago
- deMULTIplex2: robust sample demultiplexing for scRNA-seq☆19Mar 12, 2026Updated 2 weeks ago
- Guided construction of single cell reference☆12Jul 3, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A tool that allows to get UMI counts from a single cell protein assay☆87Apr 23, 2025Updated 11 months ago
- R package for single-cell RNA-sequencing analysis☆15Sep 30, 2025Updated 6 months ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆20May 22, 2021Updated 4 years ago
- Detect doublets in single-cell RNA-seq data☆86Jul 3, 2019Updated 6 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆534Mar 21, 2025Updated last year
- Bead-based single-cell atac processing☆33Nov 13, 2021Updated 4 years ago
- manifold metric and correction techniques for (Bayesian) GPLVM from GPy☆12Mar 1, 2020Updated 6 years ago
- Dynamical information enables inference of gene regulation at single-cell scale☆12Jun 9, 2025Updated 9 months ago
- Immune Profiling of Atherosclerotic Plaques Identifies☆10Sep 18, 2023Updated 2 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Scripts used for "Comparing transcriptional dynamics of the epithelial-mesenchymal transition"☆18Aug 1, 2023Updated 2 years ago
- STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data☆180Dec 18, 2021Updated 4 years ago
- Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data☆21May 19, 2025Updated 10 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆317Nov 1, 2022Updated 3 years ago
- Normalize CITEseq Data☆70Nov 9, 2025Updated 4 months ago
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 3 years ago
- Code and scripts used in analysis of snRNAseq cerebellar cortex atlas☆12Oct 11, 2021Updated 4 years ago
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated last year
- Pipeline for processing inDrops sequencing data☆75Oct 26, 2018Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R package for integrating and analyzing multiple single-cell datasets☆427Feb 4, 2026Updated last month
- ☆12Jul 25, 2019Updated 6 years ago
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 6 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆78Dec 14, 2023Updated 2 years ago
- An R package designed to demultiplex cell hashing data☆31Feb 10, 2026Updated last month
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆26May 12, 2020Updated 5 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58May 5, 2021Updated 4 years ago
- kallisto index tag extractor☆20Jul 6, 2019Updated 6 years ago
- Probabilistic gene expression barcodes for cell type annotation☆26Apr 26, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆48Jul 20, 2022Updated 3 years ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆20Apr 1, 2024Updated last year
- main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datase…☆114Jan 20, 2023Updated 3 years ago
- Population balance analysis☆44Apr 25, 2019Updated 6 years ago
- Clustering scRNAseq by genotypes☆198Nov 11, 2025Updated 4 months ago
- ☆26Apr 8, 2025Updated 11 months ago
- Python package to infer tensions and pressures from 3D microscopy images of embryos and tissues☆12Nov 4, 2025Updated 4 months ago