Alternatives and similar repositories for topslam:

Users that are interested in topslam are comparing it to the libraries listed below

• bioFAM / slalom
  ☆28Updated last year
• Teichlab / GPfates
  ☆19Updated 7 years ago
• YosefLab / FastProject
  Dimensionality reduction for single cell RNA-seq data
  ☆35Updated 4 years ago
• yanailab / knn-smoothing
  K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data
  ☆53Updated 2 years ago
• czbiohub-sf / molecular-cross-validation
  Calibrate and compare methods for denoising single-cell RNA-seq data
  ☆2Updated 4 years ago
• kieranrcampbell / ouijaflow
  Probabilistic single-cell pseudotime with Edward+Tensorflow
  ☆12Updated 7 years ago
• nghiavtr / BPSC
  Beta-Poisson model for single-cell RNA-seq data analyses
  ☆16Updated 5 years ago
• FertigLab / CancerInSilico
  An R package for running cell-based models
  ☆8Updated 5 years ago
• KlugerLab / t-SNE-Heatmaps
  Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq
  ☆48Updated 5 years ago
• czi-hca-comp-tools / easy-data
  easy access to benchmark datasets
  ☆50Updated 6 years ago
• kieranrcampbell / ouija
  Descriptive probabilistic marker gene approach to single-cell pseudotime inference
  ☆28Updated 5 years ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆39Updated 2 years ago
• lingfeiwang / findr
  Fast Inference of Networks from Directed Regulations
  ☆21Updated last year
• yjzhang / uncurl_python
  UNCURL is a tool for single cell RNA-seq data analysis.
  ☆15Updated 2 years ago
• cole-trapnell-lab / Scribe
  Regulatory networks with Direct Information
  ☆16Updated 5 years ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆39Updated 6 years ago
• vals / Blog
  ☆37Updated 10 months ago
• jhsiao999 / peco
  Predict cell cycle phase in a continuum from single-cell RNA-seq data
  ☆12Updated 4 years ago
• cbg-ethz / SCATrEx
  Map single-cell transcriptomes to copy number evolutionary trees.
  ☆13Updated 5 months ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆39Updated last year
• theislab / graph_abstraction
  Generate cellular maps of differentiation manifolds with complex topologies.
  ☆26Updated 6 years ago
• czbiohub-sf / simscity
  A library to simulate single-cell data
  ☆2Updated last year
• MarioniLab / Deconvolution2016
  Code and manuscript files for Aaron and Karsten's deconvolution paper.
  ☆16Updated 6 years ago
• architverma1 / tGPLVM
  tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data
  ☆17Updated 5 years ago
• Oshlack / splatter-paper
  Data and analysis for the Splatter paper
  ☆28Updated 7 years ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 3 years ago
• pachterlab / MBGBLHGP_2019
  Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"
  ☆23Updated 3 years ago
• yanailab / enhance
  ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)
  ☆13Updated 5 years ago
• simslab / scHPF
  Single-cell Hierarchical Poisson Factorization
  ☆67Updated 2 years ago
• ManuSetty / wishbone
  Wishbone is an algorithm to align cells along developmental trajectories with branches
  ☆42Updated 4 years ago