mzwiessele / topslamLinks
manifold metric and correction techniques for (Bayesian) GPLVM from GPy
☆12Updated 5 years ago
Alternatives and similar repositories for topslam
Users that are interested in topslam are comparing it to the libraries listed below
Sorting:
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- ☆21Updated 8 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- ☆12Updated 2 years ago
- easy access to benchmark datasets☆50Updated 6 years ago
- ☆29Updated 2 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Updated 7 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆29Updated 5 years ago
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 4 years ago
- HubPredictor is the R function to run Bayesian Additive Regression Trees (BART) model for predicting chromatin interaction hubs using his…☆9Updated 10 years ago
- Wishbone is an algorithm to align cells along developmental trajectories with branches☆42Updated 5 years ago
- Single cell network synthesis toolkit☆23Updated 4 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 6 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆56Updated 2 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 4 years ago
- Generate cellular maps of differentiation manifolds with complex topologies.☆27Updated 7 years ago
- Single-cell Hierarchical Poisson Factorization☆72Updated 3 years ago
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Updated 3 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- This repository is retired software☆13Updated 9 years ago
- Single cell interactive plotting tools☆23Updated 5 years ago
- Clustering cells from single cell RNA seq assays☆46Updated 6 years ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Updated 2 years ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 6 years ago
- Analysis pipeline for the adolescent mouse nervous system project☆24Updated 7 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆21Updated 3 years ago
- ☆42Updated 11 months ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Updated 6 years ago
- post-clustering differential expression test☆35Updated 6 years ago