mzwiessele / topslam

Related projects ⓘ

Alternatives and complementary repositories for topslam

• YosefLab / FastProject
  Dimensionality reduction for single cell RNA-seq data
  ☆35Updated 4 years ago
• kieranrcampbell / ouijaflow
  Probabilistic single-cell pseudotime with Edward+Tensorflow
  ☆12Updated 7 years ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆23Updated 3 years ago
• yanailab / knn-smoothing
  K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data
  ☆50Updated 2 years ago
• bioFAM / slalom
  ☆28Updated last year
• Teichlab / GPfates
  ☆19Updated 7 years ago
• RabadanLab / randomly
  A Library for Denoising Single-Cell Data with Random Matrix Theory
  ☆36Updated last year
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆39Updated 6 years ago
• yjzhang / uncurl_python
  UNCURL is a tool for single cell RNA-seq data analysis.
  ☆15Updated 2 years ago
• pachterlab / MBGBLHGP_2019
  Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"
  ☆23Updated 3 years ago
• czbiohub-sf / molecular-cross-validation
  Calibrate and compare methods for denoising single-cell RNA-seq data
  ☆2Updated 3 years ago
• architverma1 / tGPLVM
  tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data
  ☆17Updated 5 years ago
• cole-trapnell-lab / Scribe
  Regulatory networks with Direct Information
  ☆16Updated 5 years ago
• czi-hca-comp-tools / easy-data
  easy access to benchmark datasets
  ☆50Updated 6 years ago
• broadinstitute / scRNA-Seq
  ☆12Updated last year
• FertigLab / CancerInSilico
  An R package for running cell-based models
  ☆8Updated 5 years ago
• nghiavtr / BPSC
  Beta-Poisson model for single-cell RNA-seq data analyses
  ☆16Updated 5 years ago
• czbiohub-sf / tabula-muris-vignettes
  Examples analyses using the single-cell RNA-seq data from mouse cell atlases
  ☆23Updated 5 years ago
• yanailab / enhance
  ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)
  ☆13Updated 5 years ago
• swoodhouse / SCNS-Toolkit
  Single cell network synthesis toolkit
  ☆23Updated 3 years ago
• jhsiao999 / peco
  Predict cell cycle phase in a continuum from single-cell RNA-seq data
  ☆12Updated 4 years ago
• ma-compbio / PEP
  ☆14Updated 4 years ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆27Updated last year
• kundajelab / dfim
  Deep Feature Interaction Maps (DFIM)
  ☆52Updated 5 years ago
• vals / Blog
  ☆37Updated 8 months ago
• klarman-cell-observatory / sc_eVIP
  Variant impact phenotyping using Perturb-seq
  ☆9Updated 7 months ago
• klarman-cell-observatory / scPlot
  Single cell interactive plotting tools
  ☆23Updated 4 years ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆39Updated last year
• solevillar / scGeneFit-python
  Python code for genetic marker selection using linear programming
  ☆42Updated 8 months ago
• davidaknowles / eagle
  An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…
  ☆21Updated 3 years ago