deMULTIplex2: robust sample demultiplexing for scRNA-seq
☆19Mar 12, 2026Updated last month
Alternatives and similar repositories for deMULTIplex2
Users that are interested in deMULTIplex2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Guided construction of single cell reference☆14Jul 3, 2023Updated 2 years ago
- A package for reference mapping and nice visualization☆24Dec 16, 2025Updated 4 months ago
- R implementation of MULTI-seq sample classification workflow☆66Nov 22, 2023Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year
- Scripts used to perform the analyses to study the Biology of Myeloid Cells in Glioma Microenvironments☆24May 13, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆47Jan 26, 2026Updated 3 months ago
- Some NGS workflow created by snakemake☆14Jan 15, 2025Updated last year
- Pipeline for demultiplexing and aligning both ATAC and RNA data generated in SHARE-seqV2☆17Apr 21, 2023Updated 3 years ago
- SCISSORS builds upon the Louvain graph-based clustering in Seurat by optimizing parameter selection when reclustering cell groups, with a…☆14Mar 26, 2026Updated last month
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆22Dec 6, 2018Updated 7 years ago
- An R package designed to demultiplex cell hashing data☆31Apr 10, 2026Updated 2 weeks ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆65Dec 7, 2022Updated 3 years ago
- Molecular atlas of the human brain vasculature accross development, adulthood and disease at the single-cell level☆14Jul 10, 2024Updated last year
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆45Apr 23, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- marker-based purification of cell types from single-cell RNA-seq datasets☆141Mar 13, 2026Updated last month
- Computational pipeline to process EasySci-RNA data.☆23Jan 17, 2024Updated 2 years ago
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆21Updated this week
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- Probabilistic gene expression barcodes for cell type annotation☆27Apr 26, 2022Updated 4 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆30Aug 20, 2024Updated last year
- Epigenomics Program pipeline to analyze SHARE-seq data.☆23Mar 30, 2025Updated last year
- AppleScript to quickly set the start and/or start dates of selected OmniFocus items using natural language syntax.☆13Apr 2, 2013Updated 13 years ago
- Linux port of the AmdMsrTweaker program to adjust p-states for AMD 10h, 12h and 15h family processors☆13Apr 27, 2013Updated 13 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- kallisto index tag extractor☆20Jul 6, 2019Updated 6 years ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆57Jan 6, 2025Updated last year
- ☆19Oct 27, 2021Updated 4 years ago
- Analysis and visualization of RNA-Seq results☆30Apr 15, 2026Updated 2 weeks ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆33Mar 10, 2023Updated 3 years ago
- Pan-transcriptomic phenotyping☆20Mar 8, 2026Updated last month
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆34Sep 3, 2025Updated 7 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆61Aug 17, 2024Updated last year
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆33Jan 3, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- COMUNET: a tool to explore and visualize intercellular communication☆12Apr 15, 2020Updated 6 years ago
- The Singularity Community Catalog of Singularity* recipe files.☆11Oct 27, 2025Updated 6 months ago
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆10Feb 23, 2026Updated 2 months ago
- A python package implements scTenifoldnet and scTenifoldknk☆56Oct 18, 2022Updated 3 years ago
- Factorize-Recover for Perturb-seq analysis (FR-Perturb)☆25Nov 4, 2025Updated 5 months ago
- scripts associated with NAFLD-NASH project☆29May 23, 2024Updated last year
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Dec 20, 2018Updated 7 years ago