Gartner-Lab / deMULTIplex2Links
deMULTIplex2: robust sample demultiplexing for scRNA-seq
☆16Updated 11 months ago
Alternatives and similar repositories for deMULTIplex2
Users that are interested in deMULTIplex2 are comparing it to the libraries listed below
Sorting:
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- R implementation of MULTI-seq sample classification workflow☆66Updated 2 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆87Updated 9 months ago
- Functional Inference of Gene Regulation☆51Updated last year
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆69Updated last year
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- Analysis of cell-cell communication at single-cell resolution☆106Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 6 years ago
- scWGCNA☆61Updated 3 years ago
- Create cisTarget databases☆55Updated 7 months ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated last year
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- ☆25Updated 11 months ago
- ☆75Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- ☆121Updated 5 months ago
- Analysis of Paired-Tag datasets☆43Updated 2 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆81Updated 5 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆79Updated this week
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- A repo with random short code snippets☆41Updated 6 years ago
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆87Updated 9 months ago
- R package for pathway analysis in scRNA-seq data☆77Updated last year
- Direct estimation of mean and covariance from single cell RNA seq experiments☆128Updated 9 months ago
- Capybara: A computational tool to measure cell identity and fate transitions☆60Updated 3 years ago
- SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.☆88Updated last month
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆116Updated 9 months ago
- single-cell clustering based on alternative splicing landscapes☆23Updated last year