GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index
☆36Jun 18, 2018Updated 7 years ago
Alternatives and similar repositories for GiniClust
Users that are interested in GiniClust are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Jul 13, 2018Updated 7 years ago
- Robust and scalable inference of cell lineages via consensus clustering. Features novel algorithms for the comparison of weighted graphs …☆14Jan 16, 2017Updated 9 years ago
- Single-cell Orientation Tracing☆22Jan 23, 2022Updated 4 years ago
- ☆12Jul 30, 2022Updated 3 years ago
- The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysi…☆18Oct 22, 2021Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆48May 13, 2016Updated 9 years ago
- Cell type purification by single-cell transcriptome-trained sorting☆15Jul 8, 2019Updated 6 years ago
- Code to support: "pcaReduce: hierarchical clustering of single cell transcriptional profiles"☆21Feb 24, 2024Updated 2 years ago
- Clustering through Imputation and Dimensionality Reduction☆64Sep 21, 2017Updated 8 years ago
- An algorithm used to classify the cell types from single cell rna sequence data.☆10Jan 24, 2021Updated 5 years ago
- An R package to construct Elastic Principal Graphs☆24Nov 29, 2019Updated 6 years ago
- Matlab implementation of the Elastic Principal Graphs (ElPiGraph) method☆14Dec 6, 2022Updated 3 years ago
- weighted indexes for clustering evaluation☆14Apr 18, 2020Updated 6 years ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Variational autoencoder for single cell RNA-seq datasets☆44Aug 15, 2017Updated 8 years ago
- Biclustering algorithm☆58Dec 11, 2017Updated 8 years ago
- ☆14Mar 11, 2022Updated 4 years ago
- Single cell RNA-seq preprocessing tool for gene-by-cell matrices of UMI counts. It is recommended to use the raw spliced and unpliced cou…☆19Sep 29, 2025Updated 7 months ago
- SHARP: Single-cell RNA-seq Hyper-fast and Accurate processing via ensemble Random Projection☆18Apr 26, 2021Updated 5 years ago
- ☆34Jun 12, 2019Updated 6 years ago
- Single-cell Hierarchical Poisson Factorization☆74Feb 14, 2026Updated 2 months ago
- Deep Embedding for Single-cell Clustering☆89Apr 9, 2024Updated 2 years ago
- Marker gene selection from scRNA-seq data☆16Sep 15, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆19Mar 12, 2024Updated 2 years ago
- Rare cell identification tool for single cell datasets☆22Jun 14, 2022Updated 3 years ago
- Geometry-preserving random sampling☆97Oct 29, 2024Updated last year
- ☆16Jul 9, 2024Updated last year
- A package for combining multiple partitions into a consolidated clustering. The combinatorial optimization problem of obtaining such a co…☆74Jul 27, 2022Updated 3 years ago
- A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments☆129Jun 28, 2021Updated 4 years ago
- ☆21Jul 3, 2019Updated 6 years ago
- ☆55Feb 19, 2025Updated last year
- A scalable and concurrent programming implementation of Affinity Propagation clustering.☆28Nov 10, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- LFQC: Fastq Compression Algorithm☆13Jan 6, 2016Updated 10 years ago
- Normalization for single cell RNA-seq data☆51Jun 11, 2025Updated 10 months ago
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆16May 4, 2021Updated 5 years ago
- Single-cell Consensus Clusters of Encoded Subspaces☆15Aug 14, 2023Updated 2 years ago
- A single cell transcriptome atlas of the developing zebrafish hindbrain.☆14Jan 2, 2020Updated 6 years ago
- ☆21Dec 23, 2024Updated last year
- Single Cell Cluster Evaluation☆101Jul 28, 2021Updated 4 years ago