lanjiangboston / GiniClustLinks
GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index
☆35Updated 7 years ago
Alternatives and similar repositories for GiniClust
Users that are interested in GiniClust are comparing it to the libraries listed below
Sorting:
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆45Updated 9 years ago
- ☆37Updated 9 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- An R-based interface for loom files☆67Updated 5 years ago
- Clone of the Bioconductor repository for the scran package.☆43Updated 11 months ago
- ☆42Updated 4 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Multi-sample Unified Discriminant ANalysis☆74Updated 2 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆50Updated last year
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆18Updated 5 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated last year
- ☆35Updated 5 months ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- ☆28Updated 6 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆56Updated 4 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- Single Cell Epigenome-based Inference of Activity☆19Updated last year
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated 11 months ago
- ☆34Updated 6 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- ☆17Updated 6 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆42Updated 3 years ago
- The Self-Assembling-Manifold (SAM) algorithm.☆44Updated last year
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. This is a novel R package of the RaceID3 and S…☆43Updated 9 months ago
- ☆48Updated 7 years ago