lanjiangboston / GiniClustView external linksLinks
GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index
☆36Jun 18, 2018Updated 7 years ago
Alternatives and similar repositories for GiniClust
Users that are interested in GiniClust are comparing it to the libraries listed below
Sorting:
- ☆12Jul 13, 2018Updated 7 years ago
- Robust and scalable inference of cell lineages via consensus clustering. Features novel algorithms for the comparison of weighted graphs …☆14Jan 16, 2017Updated 9 years ago
- Cell type purification by single-cell transcriptome-trained sorting☆14Jul 8, 2019Updated 6 years ago
- Single-cell Orientation Tracing☆22Jan 23, 2022Updated 4 years ago
- The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysi…☆16Oct 22, 2021Updated 4 years ago
- weighted indexes for clustering evaluation☆14Apr 18, 2020Updated 5 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆46May 13, 2016Updated 9 years ago
- Code to support: "pcaReduce: hierarchical clustering of single cell transcriptional profiles"☆20Feb 24, 2024Updated last year
- ☆34Jun 12, 2019Updated 6 years ago
- Single-cell Hierarchical Poisson Factorization☆74Aug 9, 2022Updated 3 years ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 5 years ago
- A single cell transcriptome atlas of the developing zebrafish hindbrain.☆14Jan 2, 2020Updated 6 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- An algorithm used to classify the cell types from single cell rna sequence data.☆10Jan 24, 2021Updated 5 years ago
- An R package to construct Elastic Principal Graphs☆24Nov 29, 2019Updated 6 years ago
- Clustering through Imputation and Dimensionality Reduction☆63Sep 21, 2017Updated 8 years ago
- Single-cell Consensus Clusters of Encoded Subspaces☆14Aug 14, 2023Updated 2 years ago
- ☆12Jul 30, 2022Updated 3 years ago
- Variational autoencoder for single cell RNA-seq datasets☆44Aug 15, 2017Updated 8 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated 11 months ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆13Dec 26, 2022Updated 3 years ago
- Matlab implementation of the Elastic Principal Graphs (ElPiGraph) method☆14Dec 6, 2022Updated 3 years ago
- ☆55Feb 19, 2025Updated 11 months ago
- ☆11May 30, 2023Updated 2 years ago
- clusterBMA: Bayesian Model Averaging for Clustering☆13Feb 5, 2024Updated 2 years ago
- ☆15Jan 13, 2021Updated 5 years ago
- ☆14Mar 11, 2022Updated 3 years ago
- ☆16Jul 9, 2024Updated last year
- Differential expression analysis for single-cell RNA-seq data☆14Feb 15, 2019Updated 6 years ago
- Geometry-preserving random sampling☆96Oct 29, 2024Updated last year
- ☆32May 19, 2019Updated 6 years ago
- A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments☆129Jun 28, 2021Updated 4 years ago
- Normalization for single cell RNA-seq data☆51Jun 11, 2025Updated 8 months ago
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆15Jun 28, 2024Updated last year
- LFQC: Fastq Compression Algorithm☆13Jan 6, 2016Updated 10 years ago
- A statistical simulator for rational scRNA-seq experimental design☆12Dec 14, 2020Updated 5 years ago
- Single cell RNA Seq data analysis with quantitative phenotypes☆13Nov 17, 2020Updated 5 years ago
- Single cell RNA-seq preprocessing tool for gene-by-cell matrices of UMI counts. It is recommended to use the raw spliced and unpliced cou…☆19Sep 29, 2025Updated 4 months ago
- The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Se…☆19Updated this week