chlbaron / GateID
Cell type purification by single-cell transcriptome-trained sorting
☆14Updated 5 years ago
Alternatives and similar repositories for GateID
Users that are interested in GateID are comparing it to the libraries listed below
Sorting:
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- ☆12Updated 5 years ago
- ☆29Updated 2 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- corto (Correlation Tool): an R package to generate correlation-based DPI networks☆20Updated 2 years ago
- ☆36Updated 10 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- ☆13Updated 10 months ago
- ☆41Updated 4 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- scover☆23Updated last year
- Supplementary data for Petti, et al 2019 scRNA mutation publication☆16Updated 2 years ago
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- ☆28Updated 6 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆31Updated last month
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 3 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 6 months ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 10 months ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 4 years ago
- ☆23Updated 2 years ago
- ☆17Updated 2 years ago