chlbaron / GateID
Cell type purification by single-cell transcriptome-trained sorting
☆14Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for GateID
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- ☆29Updated last year
- Bead-based single-cell atac processing☆31Updated 3 years ago
- ☆27Updated 3 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆15Updated this week
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆15Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆33Updated 3 years ago
- Cluster Identity Predictor (R package implementation)☆18Updated 2 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 4 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- ☆29Updated 5 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 weeks ago
- ☆37Updated 3 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- An R package to analyze single-cell V(D)J data☆24Updated last year
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated 11 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- ☆11Updated 5 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 4 years ago
- ☆11Updated 4 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆24Updated 10 months ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆21Updated 5 years ago
- Reconstruction of spatial context of gene expression with optimal transport☆11Updated 5 years ago
- ☆19Updated 2 weeks ago
- SCASA: Single cell transcript quantification tool☆19Updated 11 months ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 2 years ago
- An r package that works as a wrapper to homologene☆42Updated last year