Guided construction of single cell reference
☆16Jul 3, 2023Updated 3 years ago
Alternatives and similar repositories for CellRef
Users that are interested in CellRef are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cell type purification by single-cell transcriptome-trained sorting☆16Jul 8, 2019Updated 7 years ago
- ☆37Nov 29, 2021Updated 4 years ago
- ☆10Nov 5, 2023Updated 2 years ago
- deMULTIplex2: robust sample demultiplexing for scRNA-seq☆21Mar 12, 2026Updated 7 months ago
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…☆48Apr 8, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Supplementary files and notebooks to recreate figures.☆24Aug 4, 2026Updated 3 months ago
- Vaeda method for computational doublet annotation☆21Feb 1, 2026Updated 9 months ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆36Jul 13, 2024Updated 2 years ago
- Data analysis for the moscot-framework project☆27Feb 27, 2026Updated 8 months ago
- Pathway-Level Single-Cell Functional Profiling of Individual Patient Samples☆11Aug 6, 2025Updated last year
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.☆44Mar 3, 2017Updated 9 years ago
- scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies☆11Oct 27, 2023Updated 3 years ago
- Functional Annotation for Single-Cell Transcriptomics☆12Jun 29, 2024Updated 2 years ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Fast and Scalable Single Cell Differential Expression Analysis using Mixed-effects Models☆14Apr 8, 2026Updated 6 months ago
- COMUNET: a tool to explore and visualize intercellular communication☆13Apr 15, 2020Updated 6 years ago
- CCCvelo: Decoding dynamic cell-cell communication-driven cell state transitions in spatial transcriptomics☆13Sep 14, 2026Updated last month
- Probability Model of Accessible Chromatin of Single cells☆11Aug 14, 2026Updated 2 months ago
- scSurvival is a new tool for survival analysis from single cell cohort dataset.☆28Apr 27, 2026Updated 6 months ago
- R package for scMultiMap, a statistical method for cell-type-specific mapping of enhancer-gene pairs with single-cell multimodal data☆10Jun 12, 2025Updated last year
- ☆17Apr 11, 2024Updated 2 years ago
- Code repository site for manuscript: Unraveling the Heterogeneity of Tumor-Infiltrating Myeloid Cells in Immune Checkpoint Blockade: A Si…☆13Jun 24, 2023Updated 3 years ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆36Jul 23, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆16Jul 9, 2024Updated 2 years ago
- ☆64Jul 6, 2021Updated 5 years ago
- A versatile and lightning fast package for processing 10X, inDrop and Drop-seq data.☆14Feb 3, 2019Updated 7 years ago
- R package for single-cell comparative regulatory analysis☆13Jun 26, 2021Updated 5 years ago
- GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index☆36Jun 18, 2018Updated 8 years ago
- scITDG is a tool for identifying time-dependent genes in single-cell sequencing data☆17Nov 24, 2025Updated 11 months ago
- ☆15May 3, 2026Updated 6 months ago
- A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v…☆33Sep 14, 2020Updated 6 years ago
- ☆38Jul 26, 2016Updated 10 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Estimate the cis-regulatory activity of transposable element (TEs) subfamilies☆12Dec 15, 2023Updated 2 years ago
- https://relab.xidian.edu.cn/AgeAnno/#/☆15Oct 22, 2022Updated 4 years ago
- ☆20Sep 29, 2021Updated 5 years ago
- R and MATLAB scripts for MAGICAL☆11Jun 26, 2024Updated 2 years ago
- Some NGS workflow created by snakemake☆14Jun 30, 2026Updated 4 months ago
- Functional Inference of Gene Regulation☆56Jul 5, 2024Updated 2 years ago
- ☆17Jun 17, 2021Updated 5 years ago