Alternatives and similar repositories for emt_dynamics

Users that are interested in emt_dynamics are comparing it to the libraries listed below

• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆103Updated 11 months ago
• MarioniLab / EmbryoTimecourse2018
  Data and analysis scripts for our Embryo Timecourse paper.
  ☆69Updated 5 years ago
• GreenleafLab / 10x-scATAC-2019
  Publication Page for Satpathy*, Granja* et al 2019
  ☆95Updated 5 years ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆35Updated 5 years ago
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆95Updated last year
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆107Updated 3 months ago
• GreenleafLab / MPAL-Single-Cell-2019
  Publication Page for MPAL Paper 2019
  ☆83Updated 5 years ago
• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆95Updated 4 years ago
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆95Updated 4 years ago
• Coolgenome / iTALK
  ☆61Updated 6 years ago
• data2intelligence / CytoSig
  ☆55Updated 10 months ago
• LocasaleLab / Single-Cell-Metabolic-Landscape
  Pipeline for exploring metebolic heterogeneity at single-cell resolution
  ☆73Updated 5 years ago
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆83Updated last year
• nghiavtr / SCmut
  ☆33Updated 6 years ago
• morris-lab / BiddyetalWorkflow
  This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.
  ☆32Updated last year
• aertslab / create_cisTarget_databases
  Create cisTarget databases
  ☆52Updated last month
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆73Updated 9 months ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆46Updated last year
• quadbio / scMultiome_analysis_vignette
  Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis
  ☆63Updated last year
• immunogenomics / LISI
  Methods to compute Local Inverse Simpson's Index (LISI)
  ☆67Updated 3 years ago
• califano-lab / single-cell-pipeline
  ☆50Updated 5 years ago
• AntonioDeFalco / SCEVAN
  R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …
  ☆107Updated 4 months ago
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆36Updated 4 years ago
• rpolicastro / scProportionTest
  ☆71Updated last year
• tanaylab / metacells
  Metacells - Single-cell RNA Sequencing Analysis
  ☆110Updated 10 months ago
• spcdot / CopyscAT
  Inferring CNV data from single cell ATAC seq
  ☆24Updated last month
• haniffalab / FCA_liver
  All software used for “Decoding human fetal liver haematopoiesis” (Popescu, Botting, Stephenson et al., 2019).
  ☆39Updated 5 years ago
• harbourlab / uphyloplot2
  Draw phylogenetic trees of tumor evolution
  ☆81Updated 2 years ago
• theislab / scib-pipeline
  Snakemake pipeline that works with the scIB package to benchmark data integration methods.
  ☆75Updated 6 months ago
• Japrin / sscClust
  simpler single cell RNAseq data clustering
  ☆40Updated 5 months ago