Alternatives and similar repositories for Single-Cell-Immune-Profiling-of-Atherosclerotic-Plaques:

Users that are interested in Single-Cell-Immune-Profiling-of-Atherosclerotic-Plaques are comparing it to the libraries listed below

• miccec / GBMstates
  Scripts from the GBM cellular states paper
  ☆18Updated 3 years ago
• LieberInstitute / VistoSeg
  Image processing pipeline for spatial projects
  ☆15Updated last year
• TransBioInfoLab / TNBC_analysis
  Code to reproduce TNBC analysis and figures
  ☆23Updated 2 years ago
• SydneyBioX / scReClassify
  Post hoc cell type classification of single-cell RNA-sequencing data.
  ☆10Updated 3 years ago
• Nanostring-Biostats / SpatialOmicsOverlay
  Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).
  ☆18Updated last month
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆39Updated 2 years ago
• CamaraLab / STvEA
  Spatially-resolved Transcriptomics via Epitope Anchoring
  ☆18Updated 9 months ago
• OSU-BMBL / scread-protocol
  ☆16Updated 2 years ago
• BaderLab / AgingMouseBrainCCInx
  Predicted cell-cell interactions of the aging mouse brain
  ☆20Updated 5 years ago
• KChen-lab / MEDALT
  Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile
  ☆18Updated last year
• scverse / muon-tutorials
  Tutorials for multimodal omics data analysis
  ☆13Updated 2 years ago
• jingxinfu / TIDEpy
  TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…
  ☆34Updated 2 years ago
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆28Updated 2 months ago
• caleblareau / asap_reproducibility
  Reproducing all analyses and figures for the ASAP-seq paper
  ☆29Updated 3 years ago
• SpatialTranscriptomicsResearch / std-nb
  Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018
  ☆21Updated 6 years ago
• klarman-cell-observatory / hdst
  ☆19Updated 5 years ago
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆25Updated last year
• NathanSkene / EWCE
  Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
  ☆54Updated 2 months ago
• theMILOlab / SPATA
  SPATA Package for spatial gene expression analysis
  ☆21Updated 2 years ago
• mbernste / SpatialCorr
  SpatialCorr: Identify gene sets with spatially varying correlation
  ☆14Updated last year
• ambrosejcarr / seqc
  Single-Cell Sequencing Quality Control and Processing Software
  ☆30Updated 5 years ago
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆15Updated 2 months ago
• wanglab-broad / CAST
  CAST package
  ☆27Updated 2 months ago
• limix / CellRegMap
  CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq
  ☆21Updated 4 months ago
• rosedu1 / deconvSeq
  deconvolution for RNAseq and bisulfite sequencing
  ☆10Updated 4 years ago
• shahcompbio / spectrum-tme
  Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"
  ☆21Updated last year
• zhengtaoxiao / Single-Cell-Metabolic-Landscape
  Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data
  ☆23Updated 3 years ago
• theislab / scArches-reproducibility
  Reproducing result from the paper
  ☆33Updated 3 years ago
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆26Updated 4 years ago