Alternatives and similar repositories for DRVI:

Users that are interested in DRVI are comparing it to the libraries listed below

• openproblems-bio / openproblems-v2
  Formalizing and benchmarking open problems in single-cell genomics
  ☆56Updated 5 months ago
• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆58Updated this week
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated 3 weeks ago
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆68Updated 2 months ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆70Updated last month
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆69Updated last year
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆33Updated this week
• cantinilab / Circe
  Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).
  ☆21Updated 3 weeks ago
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆36Updated last week
• YosefLab / popV
  ☆73Updated this week
• theislab / prophet
  ☆31Updated last week
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆61Updated last year
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆62Updated 2 years ago
• andreariba / DeepCycle
  Cell cycle inference in single-cell RNA-seq
  ☆46Updated 2 years ago
• theislab / scTab
  ☆58Updated 7 months ago
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆73Updated last month
• drieslab / awesome-spatial-data-analysis
  Awesome list of tools and methods to perform spatial transcriptomic data analysis.
  ☆42Updated 3 years ago
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆60Updated 10 months ago
• bowang-lab / DeepVelo
  ☆47Updated last year
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆58Updated last year
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆74Updated 4 months ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆47Updated 3 months ago
• dpeerlab / ENVI
  ☆48Updated last month
• elixir-europe-training / ELIXIR-SCO-spatial-omics
  ☆36Updated last month
• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆31Updated 3 weeks ago
• epigen / CellWhisperer
  CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets
  ☆54Updated 6 months ago
• lilab-bcb / harmony-pytorch
  ☆53Updated last month
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆110Updated 6 months ago
• const-ae / linear_perturbation_prediction-Paper
  ☆21Updated last week
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆68Updated last month