theislab / DRVILinks
Unsupervised Deep Disentangled Representation of Single-Cell Omics
☆44Updated last week
Alternatives and similar repositories for DRVI
Users that are interested in DRVI are comparing it to the libraries listed below
Sorting:
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆38Updated this week
- Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).☆21Updated 2 months ago
- Single cell omics biology annotations☆51Updated 2 months ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆60Updated last week
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last year
- pseudobulking on an AnnData object☆32Updated 3 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆43Updated 3 years ago
- ☆78Updated last week
- ☆54Updated last month
- ☆23Updated last month
- Gene group activity utility functions for Scanpy☆78Updated 6 months ago
- Python implementation of the Slingshot pseudotime algorithm☆61Updated last year
- Python implementation of Milo for differential abundance testing on KNN graph☆71Updated 4 months ago
- Formalizing and benchmarking open problems in single-cell genomics☆56Updated last week
- Additional code and analysis from the single-cell integration benchmarking project☆67Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 5 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated last year
- Predict RNA velocity through deep learning☆69Updated last year
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆48Updated 5 months ago
- Pipeline to run scE2G☆26Updated this week
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated this week
- R implementation of GeneTrajectory☆59Updated last year
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆97Updated 3 months ago
- single cell foundation model for Gene network inference and more☆17Updated this week
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆33Updated this week
- ☆59Updated 9 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆75Updated 3 months ago
- ☆48Updated last month
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆41Updated 2 years ago
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆52Updated 5 months ago