Alternatives and similar repositories for DRVI

Users that are interested in DRVI are comparing it to the libraries listed below

• openproblems-bio / openproblems-v2
  Formalizing and benchmarking open problems in single-cell genomics
  ☆57Updated 5 months ago
• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆77Updated this week
• cantinilab / Circe
  Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.
  ☆29Updated 2 weeks ago
• mossjacob / pyslingshot
  Python implementation of the Slingshot pseudotime algorithm
  ☆66Updated 2 weeks ago
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆50Updated last week
• theislab / prophet
  ☆37Updated 2 weeks ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆71Updated 2 years ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆95Updated last week
• cantinilab / scPRINT
  🏃 The go-to single-cell Foundation Model
  ☆117Updated last week
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆68Updated 2 years ago
• LewisLabUCSD / Ligand-Receptor-Pairs
  Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.
  ☆144Updated 2 years ago
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆107Updated last month
• nitzanlab / biolord
  ☆86Updated last year
• theislab / scTab
  ☆61Updated last year
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆50Updated 6 months ago
• dpeerlab / spectra
  Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms
  ☆178Updated last year
• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆35Updated last month
• livnatje / DIALOGUE
  DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…
  ☆115Updated last year
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆112Updated last year
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆151Updated 8 months ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆50Updated 9 months ago
• jkobject / scPRINT
  single cell foundation model for Gene network inference and more
  ☆17Updated 4 months ago
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆74Updated 8 months ago
• prabhakarlab / Banksy_py
  ☆66Updated this week
• shuxiaoc / maxfuse
  ☆56Updated last year
• ZhangLabGT / scMultiSim
  A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
  ☆63Updated last week
• bowang-lab / DeepVelo
  ☆46Updated last year
• zcang / SpaOTsc
  ☆45Updated 3 months ago
• EngreitzLab / scE2G
  Pipeline to run scE2G
  ☆30Updated 3 weeks ago
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆113Updated last week