Unsupervised Deep Disentangled Representation of Single-Cell Omics
☆60Updated this week
Alternatives and similar repositories for DRVI
Users that are interested in DRVI are comparing it to the libraries listed below
Sorting:
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Aug 30, 2024Updated last year
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆106Feb 18, 2026Updated last week
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- Reproducible analyses for the NicheCompass manuscript☆13Jul 3, 2025Updated 7 months ago
- Simple scVI implementation☆12Updated this week
- Camiel's scATAC-seq analysis pipeline☆13Apr 15, 2024Updated last year
- Distributed single-cell data analysis.☆38Feb 10, 2026Updated 2 weeks ago
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆38Dec 17, 2025Updated 2 months ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Jul 11, 2025Updated 7 months ago
- Multi-resolution Variational Inference☆22Updated this week
- factor models for omics data☆33Updated this week
- ☆19Apr 30, 2025Updated 10 months ago
- ☆15Nov 24, 2025Updated 3 months ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- ☆13Aug 9, 2022Updated 3 years ago
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆16Oct 5, 2024Updated last year
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆33Feb 1, 2026Updated last month
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆25Apr 8, 2025Updated 10 months ago
- ☆19Jan 21, 2026Updated last month
- ☆13Sep 3, 2025Updated 5 months ago
- Trends in single cell papers☆17Sep 23, 2024Updated last year
- Package for the analysis of Transcripts outside segmented cells in ST data☆26Updated this week
- Accelerated, Python-only, single-cell integration benchmarking metrics☆86Updated this week
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆155Updated this week
- a dataloader to work with large single cell datasets from lamindb☆36Feb 19, 2026Updated last week
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆84Jan 19, 2026Updated last month
- Invariant Representation learning☆18Jun 26, 2024Updated last year
- ☆10Dec 4, 2023Updated 2 years ago
- ☆46Jan 28, 2026Updated last month
- Registries for biological ontologies.☆24Feb 19, 2026Updated last week
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆22Feb 14, 2023Updated 3 years ago
- Dependency-aware deep generative models for multitasking analysis of spatial genomics data☆41Jul 10, 2024Updated last year
- ☆63Sep 13, 2024Updated last year
- ☆41Jun 24, 2025Updated 8 months ago
- End-to-end analysis of spatial multi-omics data☆104Jan 26, 2026Updated last month
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆29Oct 24, 2024Updated last year
- Registry for scverse ecosystem packages☆34Updated this week
- Python package for Probe set selection for targeted spatial transcriptomics.☆48Nov 8, 2025Updated 3 months ago