Novartis / DRUG-seqLinks
DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline
☆32Updated 2 months ago
Alternatives and similar repositories for DRUG-seq
Users that are interested in DRUG-seq are comparing it to the libraries listed below
Sorting:
- Using BCR and expression for sequence embedding☆22Updated this week
- Explore the cancer relevance of your gene list☆51Updated 3 months ago
- ☆43Updated 7 months ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆25Updated 11 months ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Updated 9 months ago
- ☆19Updated 10 months ago
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆59Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆61Updated 2 months ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆42Updated 4 years ago
- Explore and download data from the recount3 project☆35Updated 2 weeks ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated this week
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously☆36Updated 2 years ago
- Signac☆25Updated 2 years ago
- ☆14Updated last month
- R package for the analysis of single-cell immune repertoires☆42Updated 3 months ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- ☆27Updated 7 months ago
- ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1101/2025.01.28.635256☆28Updated last month
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆26Updated last year
- ☆35Updated 2 months ago
- A collection of useful functions for bioinformatics data analysis☆22Updated 11 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆79Updated last week
- Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.☆20Updated 2 months ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆49Updated 6 years ago