theislab / prophetLinks
☆32Updated 3 weeks ago
Alternatives and similar repositories for prophet
Users that are interested in prophet are comparing it to the libraries listed below
Sorting:
- ☆58Updated 8 months ago
- Modeling complex perturbations with CellFlow☆44Updated this week
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆48Updated 4 months ago
- ☆54Updated last week
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆37Updated 3 weeks ago
- a dataloader to work with large single cell datasets from lamindb☆26Updated this week
- ☆14Updated 2 years ago
- single cell foundation model for Gene network inference and more☆16Updated 8 months ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆59Updated this week
- Flow & mass cytometry analytics.☆48Updated this week
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆47Updated last week
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆43Updated this week
- Spatial reconstruction of dissociated single-cell data☆17Updated last year
- ☆26Updated last week
- CZ CELLxGENE Discover Census☆100Updated this week
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆34Updated last month
- spatial transcriptome, single cell☆68Updated 2 years ago
- ☆48Updated last week
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆25Updated 2 months ago
- ☆78Updated 9 months ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆128Updated 3 months ago
- End-to-end analysis of spatial multi-omics data☆75Updated 2 months ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆47Updated 4 months ago
- Template repository for creating novel models with scvi-tools☆20Updated 2 years ago
- ☆23Updated 3 weeks ago
- ☆45Updated 2 years ago
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆47Updated 4 months ago
- SIMBA: SIngle-cell eMBedding Along with features☆61Updated 7 months ago
- cTPnet Package☆25Updated 2 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆79Updated 2 months ago