theislab / prophetLinks
☆38Updated last month
Alternatives and similar repositories for prophet
Users that are interested in prophet are comparing it to the libraries listed below
Sorting:
- ☆90Updated last year
- ☆62Updated last year
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆59Updated this week
- ☆70Updated 6 months ago
- ☆52Updated 3 weeks ago
- ☆15Updated 3 years ago
- ☆100Updated 3 months ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆35Updated 6 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆62Updated last week
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆165Updated 11 months ago
- a dataloader to work with large single cell datasets from lamindb☆34Updated this week
- End-to-end analysis of spatial multi-omics data☆102Updated last week
- ☆18Updated 9 months ago
- 🏃 The go-to single-cell Foundation Model☆138Updated last month
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆134Updated last year
- Accelerated, Python-only, single-cell integration benchmarking metrics☆85Updated last week
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆69Updated 3 months ago
- single cell foundation model for Gene network inference and more☆19Updated 2 months ago
- spatial transcriptome, single cell☆73Updated 2 years ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆61Updated 3 weeks ago
- Formalizing and benchmarking open problems in single-cell genomics☆57Updated 7 months ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆72Updated 2 months ago
- Models and datasets for perturbational single-cell omics☆171Updated 3 years ago
- ☆62Updated 8 months ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Updated 6 months ago
- SIMBA: SIngle-cell eMBedding Along with features☆66Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆118Updated this week
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆53Updated 5 months ago
- CZ CELLxGENE Discover Census☆117Updated 3 weeks ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆113Updated 4 months ago