☆41Feb 24, 2026Updated 7 months ago
Alternatives and similar repositories for prophet
Users that are interested in prophet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for sgRNA calling in direct capture Perturb-seq data☆44Jun 18, 2023Updated 3 years ago
- A tutorial on how to create bioinformatics pipelines as bash scripts, Makefiles and using tools like Nextflow.☆16Nov 14, 2022Updated 3 years ago
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- Light-weight Jupyter notebook tracker.☆33Sep 30, 2026Updated last week
- Public Codebase supporting the paper "Modeling Cellular Perturbations with The Sparse Additive Mechanism Shift Variational Autoencoder" b…☆18Oct 20, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Search- and quantification-engine agnostic biological interpretation of proteomics data☆39Updated this week
- Models and datasets for perturbational single-cell omics☆185Aug 19, 2022Updated 4 years ago
- Distributed single-cell data analysis.☆40Oct 2, 2026Updated last week
- Single-cell perturbation analysis☆347Updated this week
- parallel differential expression for single-cell perturbation sequencing☆31Aug 26, 2026Updated last month
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆12Feb 25, 2026Updated 7 months ago
- Conditional out-of-distribution prediction☆63Aug 2, 2024Updated 2 years ago
- single cell foundation model for Gene network inference and more☆20May 20, 2026Updated 4 months ago
- Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutatio…☆14Oct 22, 2025Updated 11 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Image-based Profiling Handbook☆11Sep 18, 2026Updated 3 weeks ago
- Swift Phenotypic Analysis of Cells☆11Jun 8, 2025Updated last year
- protein backbone refinement☆16Sep 12, 2024Updated 2 years ago
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆71Oct 2, 2026Updated last week
- Developmental Spatiotemporal Optimal Transport☆14Mar 19, 2025Updated last year
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆16Aug 17, 2023Updated 3 years ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆113Sep 28, 2026Updated last week
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆99Jul 31, 2019Updated 7 years ago
- ☆72Jul 21, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Conditional Monge Gap (2026; Nature Machine Intelligence)☆25Aug 10, 2026Updated last month
- Code for paper: "Removing Biases from Molecular Representations via Information Maximization"☆21Apr 4, 2024Updated 2 years ago
- Multi-omics factor analysis v2☆70Sep 4, 2026Updated last month
- ☆101Aug 10, 2026Updated last month
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆25Oct 3, 2023Updated 3 years ago
- CellVerse: Do Large Language Models Really Understand Cell Biology?☆17May 14, 2025Updated last year
- a dataloader to work with large single cell datasets from lamindb☆41Aug 27, 2026Updated last month
- Seven Bridges Genomics aligner/caller debugging and analysis tools☆14Nov 20, 2018Updated 7 years ago
- A CodecPipeline for zarr-python backed by the zarrs Rust crate☆80Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Graph-linked unified embedding for single-cell multi-omics data integration☆481Feb 9, 2026Updated 8 months ago
- pytorch dataloaders for single-cell perturbation data☆54Jul 18, 2026Updated 2 months ago
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆131Jul 6, 2025Updated last year
- ☆19Mar 21, 2024Updated 2 years ago
- ☆102Aug 12, 2024Updated 2 years ago
- single-cell latent diffusion model☆63Updated this week
- ☆21Aug 24, 2026Updated last month