Alternatives and similar repositories for alphafold3_tools:

Users that are interested in alphafold3_tools are comparing it to the libraries listed below

• Kuhlman-Lab / evopro
  ☆72Updated this week
• ELELAB / RosettaDDGPrediction
  ☆61Updated last week
• dina-lab3D / CombFold
  ☆80Updated 4 months ago
• bene837 / af2seq
  ☆41Updated 5 months ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆65Updated 5 months ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆51Updated 3 months ago
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆69Updated 6 months ago
• patrickbryant1 / MoLPC
  Modelling of Large Protein Complexes
  ☆37Updated 11 months ago
• KULL-Centre / _2024_cagiada_stability
  ☆61Updated 2 months ago
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆74Updated 5 months ago
• ikalvet / heme_binder_diffusion
  ☆107Updated 4 months ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆47Updated last month
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆104Updated last month
• clami66 / AF_unmasked
  Source code and examples for AlphaFold Unmasked
  ☆56Updated 2 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆38Updated last week
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆56Updated 2 months ago
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆75Updated 2 months ago
• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆27Updated 8 months ago
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆36Updated 2 months ago
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆93Updated last year
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆144Updated 5 months ago
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆38Updated 9 months ago
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆86Updated this week
• colbyford / PyMOLfold
  Plugin for folding sequences directly in PyMOL
  ☆84Updated last week
• levinthal / Pallatom
  ☆82Updated 3 months ago
• ShintaroMinami / PyDSSP
  A simplified implementation of DSSP algorithm for PyTorch and NumPy
  ☆77Updated 3 months ago
• sokrypton / af2bind
  ☆46Updated last week
• westlake-repl / SaprotHub
  SaprotHub: Making Protein Modeling Accessible to All Biologists
  ☆92Updated this week
• LAnAlchemist / Pseudocycle_small_molecule_binder
  Small_molecule_binder_design_use_pseudocycles
  ☆18Updated 3 months ago
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆50Updated 10 months ago