Toolkit for alphafold3 input and output files
☆106Jul 15, 2026Updated last week
Alternatives and similar repositories for alphafold3_tools
Users that are interested in alphafold3_tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A drop-in replacement for Rosetta Relax☆29Jan 30, 2026Updated 5 months ago
- Plugin for folding sequences directly in PyMOL☆29Aug 5, 2025Updated 11 months ago
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆63Apr 6, 2026Updated 3 months ago
- Diffusion-based all-atom protein generative model.☆237Aug 27, 2025Updated 10 months ago
- Local Interaction Score (LIS) for structure prediction analysis☆84Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆92Sep 25, 2024Updated last year
- Modelling protein conformational landscape with Alphafold☆61Aug 29, 2025Updated 10 months ago
- Structure prediction and design of proteins with noncanonical amino acids☆139Feb 1, 2026Updated 5 months ago
- ☆50Jun 15, 2026Updated last month
- ☆57Jul 15, 2026Updated last week
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 3 years ago
- Protein-ligand structure prediction☆240Jul 31, 2025Updated 11 months ago
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆536Mar 22, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- HBDesigner is an algorithm that designs highly-connected hydrogen bonding networks that fit the requested design constraints onto an inpu…☆16Jun 25, 2026Updated last month
- ☆257Feb 12, 2026Updated 5 months ago
- A toolkit developed to predict and analyze PROTAC-mediated ternary complexes using AlphaFold3 and Boltz-1.☆43Jul 17, 2025Updated last year
- NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model☆332Oct 6, 2025Updated 9 months ago
- ☆90Nov 18, 2025Updated 8 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Apr 13, 2026Updated 3 months ago
- Official repository of EnzymeFlow☆102Dec 7, 2024Updated last year
- Structure prediction of alternative protein conformations☆85Feb 24, 2025Updated last year
- SubPEx (Sub-Pocket Explorer) is a tool to enhance ensemble (multiple-receptor/relaxed-complex) virtual screening. It uses weighted ensemb…☆18Jun 30, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- AlphaFold-initiated replica exchange protein docking☆93Jun 5, 2025Updated last year
- Protein-peptide docking with ESMFold language model☆16May 30, 2026Updated last month
- Protein design and sculpting using Rosetta and Deep learning methods (RFDiff and Alphafold2)☆67Jun 30, 2026Updated 3 weeks ago
- ☆144Jun 3, 2025Updated last year
- a universal molecular interaction modeling platform based on AlphaFold3, supporting structure prediction and analysis for various recepto…☆49Nov 20, 2025Updated 8 months ago
- Explicit crosslinks in AlphaFold 3☆22Mar 17, 2025Updated last year
- ☆16Jun 3, 2025Updated last year
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆190Oct 7, 2025Updated 9 months ago
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆193Jun 24, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Metadiffusion implemented in Boltz-2☆24Feb 23, 2026Updated 5 months ago
- ☆99Jul 9, 2026Updated 2 weeks ago
- ☆22Sep 19, 2025Updated 10 months ago
- A model-context-protocol server for molecules.☆96Apr 20, 2025Updated last year
- P2DFlow: A Protein Ensemble Generative Model with SE(3) Flow Matching☆43May 22, 2025Updated last year
- An automatic workflow to perform MM/GB(PB)SA calculations from force field building, and structure optimization to free energy calculatio…☆142Jan 13, 2026Updated 6 months ago
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆41Sep 27, 2024Updated last year