Toolkit for alphafold3 input and output files
☆111Oct 23, 2026Updated last week
Alternatives and similar repositories for alphafold3_tools
Users that are interested in alphafold3_tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Mar 28, 2025Updated last year
- Structure prediction and design of proteins with noncanonical amino acids☆149Feb 1, 2026Updated 9 months ago
- Scripts to add mmseqs MSA/templates to alphafold3 input json and also custom template files☆27Dec 4, 2024Updated last year
- Plugin for folding sequences directly in PyMOL☆29Aug 5, 2025Updated last year
- Structure-based antibody renumbering☆17Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Modelling protein conformational landscape with Alphafold☆62Oct 1, 2026Updated last month
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- ☆11Oct 8, 2024Updated 2 years ago
- a universal molecular interaction modeling platform based on AlphaFold3, supporting structure prediction and analysis for various recepto…☆52Nov 20, 2025Updated 11 months ago
- A command-line interface and Python library for generating AlphaFold3 input files.☆42Jan 2, 2026Updated 10 months ago
- ☆11Mar 27, 2026Updated 7 months ago
- Diffusion-based all-atom protein generative model.☆238Aug 27, 2025Updated last year
- Towards a protein binder candidate for every protein☆43Sep 1, 2026Updated 2 months ago
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆64Aug 5, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆73Apr 13, 2026Updated 6 months ago
- A drop-in replacement for Rosetta Relax☆30Oct 22, 2026Updated last week
- AlphaFold-initiated replica exchange protein docking☆95Jun 5, 2025Updated last year
- ☆95Sep 25, 2024Updated 2 years ago
- Local Interaction Score (LIS) for structure prediction analysis☆91Oct 5, 2026Updated 3 weeks ago
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆547Mar 22, 2026Updated 7 months ago
- ☆61Aug 19, 2026Updated 2 months ago
- Protein-peptide docking with ESMFold language model☆16May 30, 2026Updated 5 months ago
- Official repository of EnzymeFlow☆102Dec 7, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆261Sep 22, 2026Updated last month
- ☆91Nov 18, 2025Updated 11 months ago
- ☆36Mar 2, 2026Updated 8 months ago
- Protein-ligand structure prediction☆242Jul 31, 2025Updated last year
- ☆121Dec 7, 2022Updated 3 years ago
- ☆52Jun 15, 2026Updated 4 months ago
- Structure prediction of alternative protein conformations☆86Feb 24, 2025Updated last year
- HInt (Homologous Interactions)☆10Updated this week
- Explicit crosslinks in AlphaFold 3☆23Mar 17, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆23Sep 19, 2025Updated last year
- GPU-accelerated (CUDA) contact molecular surface (CMS) and Lawrence & Colman shape complementarity (SC) for protein design☆32Sep 26, 2026Updated last month
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆90Jul 2, 2025Updated last year
- Python code to run Supervised Molecular Dynamics (SuMD) simulations☆16Apr 24, 2024Updated 2 years ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 3 years ago
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆194Oct 7, 2025Updated last year
- SubPEx (Sub-Pocket Explorer) is a tool to enhance ensemble (multiple-receptor/relaxed-complex) virtual screening. It uses weighted ensemb…☆18Jun 30, 2025Updated last year