P2DFlow: A Protein Ensemble Generative Model with SE(3) Flow Matching
☆43May 22, 2025Updated 10 months ago
Alternatives and similar repositories for P2DFlow
Users that are interested in P2DFlow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Oct 27, 2024Updated last year
- Neural Iterative Selection-Expansion using LigandMPNN/LASErMPNN and Boltz-2x☆32Feb 12, 2026Updated last month
- Code for the paper "Learning to engineer protein flexibility".☆23Mar 24, 2026Updated 2 weeks ago
- An open-source platform for developing protein models beyond AlphaFold.☆12Jul 15, 2025Updated 8 months ago
- Explicit crosslinks in AlphaFold 3☆23Mar 17, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆47Sep 16, 2024Updated last year
- Python code to run Thermal Titration Molecular Dynamics (TTMD) simulations☆20Feb 25, 2026Updated last month
- Modelling protein conformational landscape with Alphafold☆56Aug 29, 2025Updated 7 months ago
- SableBind is an open-source framework dedicated to predicting protein-ligand binding affinity☆13Feb 6, 2025Updated last year
- ☆27Feb 10, 2024Updated 2 years ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- MAGPIE☆16May 5, 2024Updated last year
- Official repository for DiffPepBuilder and DiffPepDock tools☆124Oct 24, 2025Updated 5 months ago
- Deep generative modeling of protein structural ensembles☆37Sep 22, 2025Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Structure prediction and design of proteins with noncanonical amino acids☆125Feb 1, 2026Updated 2 months ago
- TrajCast: Force-Free MD Through Autoregressive Equivariant Networks☆60Sep 23, 2025Updated 6 months ago
- All-Atom (Including Hydrogen!) Ligand-Conditioned Protein Sequence Design & Sidechain Packing GNN☆28Mar 30, 2026Updated last week
- Official Implementation of CompassDock☆21Feb 13, 2026Updated last month
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆75Feb 24, 2025Updated last year
- FeNNol Pretrained Models Collection☆21Dec 17, 2025Updated 3 months ago
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆62Mar 27, 2026Updated last week
- ☆46Dec 30, 2025Updated 3 months ago
- Conformational sampling for highly flexible proteins☆15Jan 31, 2025Updated last year
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction☆89Oct 6, 2025Updated 6 months ago
- Baseline model for PPB-Affinity benchmark data☆37May 21, 2025Updated 10 months ago
- Protein prediction models implemented with Modal☆30Mar 9, 2026Updated last month
- PREVENT: PRotein Engineering by Variational frEe eNergy approximaTion☆13Jul 4, 2024Updated last year
- Histidine Protonation State Optimizer for setting up MD simulations based on semi-empirical QM resonance☆20Mar 6, 2026Updated last month
- Plugin for folding sequences directly in PyMOL☆29Aug 5, 2025Updated 8 months ago
- Implementation of AGDIFF: Attention-Enhanced Diffusion for Molecular Geometry Prediction☆16Jun 19, 2025Updated 9 months ago
- ☆15Jun 3, 2025Updated 10 months ago
- Toolkit for alphafold3 input and output files☆100Mar 30, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Fast protein backbone generation with SE(3) flow matching.☆322Jul 19, 2024Updated last year
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆40Sep 27, 2024Updated last year
- Algorithm for identifying hydrogen bond networks in CG proteins to implement Go-like Martini 3 models☆16Oct 25, 2024Updated last year
- Molecular dynamics without molecules: searching the conformational space of proteins with generative neural networks☆11Jun 13, 2022Updated 3 years ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆57Jan 28, 2026Updated 2 months ago
- Diffusion-based all-atom protein generative model.☆233Aug 27, 2025Updated 7 months ago
- ☆74Feb 13, 2026Updated last month