☆17Aug 20, 2024Updated last year
Alternatives and similar repositories for SPEACH_AF
Users that are interested in SPEACH_AF are comparing it to the libraries listed below
Sorting:
- ☆16Updated this week
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆16Jul 25, 2023Updated 2 years ago
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 2 years ago
- Deep generative modeling of protein structural ensembles☆36Sep 22, 2025Updated 5 months ago
- ☆47Sep 16, 2024Updated last year
- ☆70Feb 13, 2026Updated 2 weeks ago
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆33Dec 14, 2023Updated 2 years ago
- Toolkit for alphafold3 input and output files☆97Updated this week
- [ICML 2024] Floating Anchor Diffusion Model for Multi-motif Scaffolding☆31Aug 23, 2024Updated last year
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 3 months ago
- code and source data for de novo design of Kemp elimination paper☆24Sep 18, 2025Updated 5 months ago
- Metrics to evaluate distributional coverage of generative models of protein structures.☆19Aug 13, 2025Updated 6 months ago
- Homomer symmetry prediction from protein sequence☆41Mar 13, 2025Updated 11 months ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- STARLING - conSTruction of intrinsicAlly disoRdered proteins ensembles efficientLy vIa multi-dimeNsional Generative models☆38Dec 23, 2025Updated 2 months ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆123Jan 16, 2026Updated last month
- Protein 3D Structure Prediction with DeepFold☆19Aug 26, 2024Updated last year
- ☆18Aug 28, 2023Updated 2 years ago
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆188Jun 24, 2024Updated last year
- Implementation of methods to sample from Boltzmann distributions☆21Jan 24, 2023Updated 3 years ago
- ☆105Feb 12, 2026Updated 2 weeks ago
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆58Apr 29, 2025Updated 10 months ago
- A conditionally adapted protein language model for the generation of enzymes☆23Nov 26, 2024Updated last year
- RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences☆27Aug 21, 2025Updated 6 months ago
- ☆35Jun 17, 2025Updated 8 months ago
- ☆146Jul 16, 2025Updated 7 months ago
- ☆24Aug 25, 2023Updated 2 years ago
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆97Jun 9, 2025Updated 8 months ago
- [NeurIPS 2024] The implementation for the paper "Geometric Trajectory Diffusion Models".☆35Jul 22, 2025Updated 7 months ago
- DiAMoNDBack: Diffusion-denoising Autoregressive Model for Non-Deterministic Backmapping of Cα Protein Traces☆20May 7, 2025Updated 9 months ago
- Files and utilities for protein-emoji☆27Nov 4, 2022Updated 3 years ago
- ☆27Feb 10, 2024Updated 2 years ago
- A Light-Weight And Interpretable Molecular Docking Model☆25Oct 23, 2024Updated last year
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆98Aug 29, 2023Updated 2 years ago
- Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins with IDPFold☆26Sep 13, 2024Updated last year
- a universal molecular interaction modeling platform based on AlphaFold3, supporting structure prediction and analysis for various recepto…☆49Nov 20, 2025Updated 3 months ago
- ☆25Oct 8, 2024Updated last year
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago