Alternatives and similar repositories for SPEACH_AF:

Users that are interested in SPEACH_AF are comparing it to the libraries listed below

• mirabdi / PDAnalysis
  ☆32Updated last year
• huhlim / alphafold-multistate
  ☆37Updated last year
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆34Updated last month
• Bitbol-Lab / DiffPALM
  Differentiable Pairing using Alignment-based Language Models
  ☆19Updated last year
• tiwarylab / af2rave
  Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2
  ☆46Updated 2 weeks ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆46Updated 4 months ago
• bene837 / af2seq
  ☆43Updated 7 months ago
• KULL-Centre / _2024_cagiada_stability
  ☆66Updated last month
• liedllab / surface_analyses
  Scores for Hydrophobicity and Charges based on SASAs
  ☆31Updated last month
• microsoft / bioemu-benchmarks
  Benchmarking code accompanying the release of `bioemu`
  ☆23Updated last week
• haddocking / arctic3d
  Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
  ☆30Updated this week
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆39Updated 11 months ago
• sokrypton / af2bind
  ☆49Updated last month
• bwicky / oligomer_hallucination
  ☆35Updated last year
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆31Updated 4 months ago
• iamysk / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆48Updated this week
• clami66 / dgram2dmap
  Converts AlphaFold distograms into distance matrices and saves them into a number of formats
  ☆12Updated 2 years ago
• ohuelab / ColabDesign-cyclic-binder
  ☆31Updated last year
• karma211225 / KarmaLoop
  Highly accurate and efficient deep learning paradigm for full-atom protein loop modeling with KarmaLoop
  ☆11Updated 11 months ago
• aqlaboratory / QuickBind
  A Light-Weight And Interpretable Molecular Docking Model
  ☆20Updated 6 months ago
• tiwarylab / alphafold2rave
  ☆68Updated 10 months ago
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆40Updated 5 months ago
• Graylab / DFMDock
  DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.
  ☆43Updated last month
• ELELAB / pyinteraph2
  development repository for PyInteraph2
  ☆22Updated last month
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆30Updated 2 weeks ago
• barricklab-at-jhu / SVD-of-MSAs
  This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…
  ☆11Updated 8 months ago
• ELELAB / PDBminer
  scripts to find PBD structures for cancer driver proteins
  ☆31Updated 2 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆32Updated last month
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆18Updated 2 months ago
• delemottelab / allosteric-pathways
  Building and analyzing residue interaction networks with cofactors (includes tutorial).
  ☆17Updated 4 years ago