Graylab / AlphaRED
AlphaFold-initiated replica exchange protein docking
☆45Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for AlphaRED
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆23Updated 4 months ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆33Updated last year
- ☆70Updated 7 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆25Updated 5 months ago
- Making Protein folding accessible to all!☆18Updated 10 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆20Updated 4 months ago
- ☆74Updated 2 months ago
- ☆35Updated 10 months ago
- ☆46Updated 5 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆33Updated 2 months ago
- Fraction of Common Contacts Clustering Algorithm for Protein Structures☆26Updated 3 years ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆25Updated 10 months ago
- Code for humanization of antibody and nanobody☆23Updated 3 weeks ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆43Updated last week
- ☆38Updated 2 months ago
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆51Updated 2 years ago
- ☆43Updated last year
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆25Updated 2 months ago
- ☆48Updated 9 months ago
- ☆43Updated 7 months ago
- Fitness landscapes for antibodies☆51Updated 7 months ago
- Tool for modelling the CDRs of antibodies☆45Updated last year
- Bioinformatics and Cheminformatics protocols for peptide analysis☆36Updated last year
- SurfDock is a Surface-Informed Diffusion Generative Model for Reliable and Accurate Protein-ligand Complex Prediction☆52Updated 3 weeks ago
- ☆34Updated 3 years ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆64Updated 2 months ago
- Efficient manipulation of protein structures in Python☆41Updated 2 weeks ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆24Updated 7 months ago
- PyDock Tutorial☆30Updated 6 years ago