AlphaFold-initiated replica exchange protein docking
☆93Jun 5, 2025Updated last year
Alternatives and similar repositories for AlphaRED
Users that are interested in AlphaRED are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- EvolveX, a de novo antibody computational design pipeline.☆24Sep 18, 2025Updated 10 months ago
- DeepSP is an antibody-specific surrogate CNN model that can generate 30 spatial properties of an antibody solely based on their sequences…☆23Feb 23, 2026Updated 5 months ago
- ☆54Jan 10, 2025Updated last year
- Material to run the HADDOCK antibody-antigen modelling protocol☆23Apr 13, 2026Updated 3 months ago
- ☆92Sep 25, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pharmacophore Elucidation with Convolutional Neural Networks and Reinforcement Learning☆18Apr 7, 2025Updated last year
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆239Dec 29, 2023Updated 2 years ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆37Nov 5, 2025Updated 9 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆102Jul 29, 2024Updated 2 years ago
- ☆30Aug 8, 2025Updated last year
- Efficient manipulation of protein structures in Python☆68Jun 16, 2026Updated last month
- ☆86May 18, 2026Updated 2 months ago
- MEGADOCK on Google Colaboratory☆20Oct 2, 2023Updated 2 years ago
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆98Jul 24, 2026Updated 2 weeks ago
- Public RFDiffusionAA repo☆483Jul 9, 2024Updated 2 years ago
- Code for ColabDock paper☆157May 1, 2025Updated last year
- open source code for Tencent tFold☆161Mar 14, 2025Updated last year
- Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.☆173Sep 8, 2024Updated last year
- ☆51Aug 21, 2023Updated 2 years ago
- ☆520Mar 5, 2026Updated 5 months ago
- AbEpiTope-1.0 is a computational tool that features two scores: AbEpiScore-1.0, designed for assessing the accuracy of modelled AbAg inte…☆33Jun 23, 2026Updated last month
- Weighted Ensemble Data Analysis and Plotting☆27Jul 17, 2026Updated 3 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆318Jun 16, 2026Updated last month
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆419Feb 26, 2026Updated 5 months ago
- Pocket to Concavity is a tool for refinement of Protein-Ligand binding site shape from alpha-spheres☆16Oct 2, 2024Updated last year
- Toolkit for alphafold3 input and output files☆106Jul 31, 2026Updated last week
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆54Jun 22, 2026Updated last month
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆190Oct 7, 2025Updated 10 months ago
- Modelling protein conformational landscape with Alphafold☆61Aug 29, 2025Updated 11 months ago
- ☆20Nov 10, 2021Updated 4 years ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆145Nov 11, 2025Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆17Oct 30, 2023Updated 2 years ago
- Official repository for DiffPepBuilder and DiffPepDock tools☆129Oct 24, 2025Updated 9 months ago
- Code for NeurIPS 2023 paper "AVIDa-hIL6: A Large-Scale VHH Dataset Produced from an Immunized Alpaca for Predicting Antigen-Antibody Inte…☆22Nov 19, 2024Updated last year
- A drop-in replacement for Rosetta Relax☆30Jan 30, 2026Updated 6 months ago
- FTDMP is a software system for running docking experiments and scoring/ranking multimeric models.☆14Aug 3, 2026Updated last week
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆263Mar 26, 2026Updated 4 months ago
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆193Jun 24, 2024Updated 2 years ago