DeepGraphLearning / DiffPackLinks
Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing
☆88Updated 2 years ago
Alternatives and similar repositories for DiffPack
Users that are interested in DiffPack are comparing it to the libraries listed below
Sorting:
- Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"☆90Updated last year
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year
- ☆108Updated 2 years ago
- Official repository of EnzymeFlow☆97Updated last year
- ☆96Updated last year
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆50Updated last week
- ☆78Updated last year
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆122Updated 9 months ago
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆97Updated 6 months ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆80Updated last year
- ☆114Updated 3 years ago
- FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)☆134Updated 5 months ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆60Updated last year
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆85Updated 2 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆84Updated last year
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆51Updated 3 months ago
- Official repository for DiffPepBuilder and DiffPepDock tools☆113Updated last month
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 7 months ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆181Updated 2 years ago
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆101Updated 2 years ago
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- Sidechain conditioning and modeling for full-atom protein sequence design☆127Updated last month
- Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)☆100Updated 8 months ago
- A geometric flow matching model for generative protein-ligand docking and affinity prediction. (ISMB 2025)☆117Updated 3 months ago
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆58Updated last year
- ☆65Updated 2 years ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆89Updated 6 months ago
- ☆42Updated 2 years ago
- Official implementation of "Generating 3D Molecules for Target Protein Binding" [ICML2022 Long Presentation]☆110Updated 2 years ago
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆73Updated 2 years ago