Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing
☆93Dec 4, 2023Updated 2 years ago
Alternatives and similar repositories for DiffPack
Users that are interested in DiffPack are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Implementation of Protein Invariant Point Packer (PIPPack)☆37May 28, 2024Updated 2 years ago
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆41Jul 9, 2023Updated 3 years ago
- Fast protein backbone generation with SE(3) flow matching.☆329Jul 19, 2024Updated 2 years ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- Diffusion-based all-atom protein generative model.☆239Aug 27, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆300Dec 10, 2024Updated last year
- Equivariant Scalar Fields for Molecular Docking with Fast Fourier Transforms☆34Dec 8, 2023Updated 2 years ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆426Jul 3, 2023Updated 3 years ago
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆548Mar 22, 2026Updated 7 months ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆281Jul 24, 2025Updated last year
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆38Nov 7, 2024Updated last year
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆63Jun 17, 2024Updated 2 years ago
- ☆75Feb 13, 2026Updated 8 months ago
- ☆257May 22, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Generative diverse protein backbones by protein language model☆35Feb 27, 2026Updated 8 months ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆568Sep 9, 2026Updated last month
- ☆121Dec 7, 2022Updated 3 years ago
- FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)☆145Jul 16, 2025Updated last year
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆108Jul 30, 2024Updated 2 years ago
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆370Jun 29, 2023Updated 3 years ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆179Apr 6, 2023Updated 3 years ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆59May 6, 2024Updated 2 years ago
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆113May 25, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A generative model for programmable protein design☆836Oct 13, 2026Updated 2 weeks ago
- SurfDock is a Surface-Informed Diffusion Generative Model for Reliable and Accurate Protein-ligand Complex Prediction☆259Sep 29, 2025Updated last year
- ☆64Sep 14, 2023Updated 3 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆334Oct 28, 2024Updated 2 years ago
- IntelliFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction.☆234Oct 10, 2026Updated 2 weeks ago
- The official implementation of the AAAI'24 paper Cross-Gate MLP with Protein Complex Invariant Embedding is A One-Shot Antibody Designer.☆12Dec 28, 2023Updated 2 years ago
- List of papers about Proteins Design using Deep Learning☆1,981Aug 15, 2026Updated 2 months ago
- A geometric flow matching model for generative protein-ligand docking and affinity prediction. (ISMB 2025)☆146Sep 7, 2026Updated last month
- Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking☆1,589May 2, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"☆96Dec 29, 2023Updated 2 years ago
- DyNoPy☆10Sep 5, 2024Updated 2 years ago
- repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model☆310Dec 23, 2025Updated 10 months ago
- ☆100Oct 15, 2024Updated 2 years ago
- ☆119Jan 3, 2026Updated 9 months ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆74Aug 4, 2026Updated 2 months ago
- Build protein-protein complexes and compute binding descriptors☆11Aug 19, 2022Updated 4 years ago