Alternatives and similar repositories for PCMol:

Users that are interested in PCMol are comparing it to the libraries listed below

• molecularmodelinglab / plantain
  Fast and accurate molecular docking with an AI pose scoring function
  ☆37Updated last year
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆67Updated 4 months ago
• iamysk / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆45Updated last week
• BioinfoMachineLearning / FlowDock
  Geometric Flow Matching for Generative Protein-Ligand Docking and Affinity Prediction (CASP16)
  ☆78Updated this week
• iambic-therapeutics / np-bench
  A benchmark for 3D biomolecular structure prediction models
  ☆55Updated 3 months ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆31Updated last year
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆74Updated 3 weeks ago
• ELELAB / PDBminer
  scripts to find PBD structures for cancer driver proteins
  ☆31Updated last month
• NasimAbdollahi / NodeCoder
  NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.
  ☆32Updated 10 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆57Updated last year
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆32Updated 4 months ago
• WeiLab-Biology / DeepProSite
  ☆31Updated last year
• huhlim / alphafold-multistate
  ☆34Updated 11 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆42Updated 3 months ago
• feiglab / idpgan
  ☆48Updated 2 months ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆52Updated 4 months ago
• anton-bushuiev / PPIformer
  Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)
  ☆47Updated 2 months ago
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆38Updated 3 months ago
• bene837 / af2seq
  ☆43Updated 6 months ago
• drorlab / FRAME
  Fragment-based Molecular Expansion
  ☆20Updated last year
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆102Updated last week
• liedllab / surface_analyses
  Scores for Hydrophobicity and Charges based on SASAs
  ☆31Updated this week
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆39Updated 10 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆28Updated last week
• tiejundong / FlexPose
  FlexPose, a framework for AI-based flexible modeling of protein-ligand binding pose.
  ☆52Updated last year
• Kuhlman-Lab / evopro
  ☆74Updated last week
• MatthewMasters / EDM-Dock
  ☆32Updated 2 years ago
• casperg92 / MaSIF_colab
  dMaSIF implementation for google colab
  ☆31Updated last year
• KULL-Centre / _2023_Tesei_IDRome
  ☆39Updated last month