polizzilab / NISELinks
Neural Iterative Selection-Expansion using LASErMPNN and Boltz-2x
☆14Updated this week
Alternatives and similar repositories for NISE
Users that are interested in NISE are comparing it to the libraries listed below
Sorting:
- All-Atom (Including Hydrogen!) Ligand-Conditioned Protein Sequence Design & Sidechain Packing Model☆12Updated last week
- Code for ApoDock☆20Updated 3 months ago
- Explicit crosslinks in AlphaFold 3☆22Updated 4 months ago
- Modelling protein conformational landscape with Alphafold☆51Updated 3 weeks ago
- ☆34Updated 2 weeks ago
- Demos of many Rosetta applications☆17Updated last month
- ☆14Updated last month
- DyNoPy☆11Updated 10 months ago
- GUI for interactive graph-based analyses of hydrogen bond networks in crystal structures and MD trajectories.☆9Updated 2 years ago
- Binding pocket optimization based on force fields and docking scoring functions☆33Updated 3 months ago
- ☆29Updated 10 months ago
- bakerlab pymol scripts☆24Updated 5 years ago
- Protein design and sculpting using Rosetta and Deep learning methods (RFDiff and Alphafold2)☆27Updated this week
- Structure prediction and design of proteins with noncanonical amino acids☆78Updated last week
- Protein prediction models implemented with Modal☆15Updated last week
- Python code to run Thermal Titration Molecular Dynamics (TTMD) simulations☆19Updated 10 months ago
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆18Updated 7 months ago
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆49Updated last week
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆18Updated 4 months ago
- Clustering of SES virtual probes for pocket generation and ranking via Isolation Forest☆12Updated 2 years ago
- Extension of ThermoMPNN for double mutant predictions☆36Updated 2 weeks ago
- A Motif Hash Based Method for Matching Crosslinkers into Peptides and Proteins☆20Updated last year
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆33Updated 8 months ago
- ☆40Updated 3 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆51Updated last month
- An open-source platform for developing protein models beyond AlphaFold.☆11Updated this week
- ☆50Updated 3 weeks ago
- ☆42Updated 2 weeks ago
- ☆22Updated last month
- The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability☆10Updated last year