Alternatives and similar repositories for af2bind

Users that are interested in af2bind are comparing it to the libraries listed below

• wallnerlab / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆54Updated 3 months ago
• bunzela / AIzymes
  ☆61Updated last month
• bene837 / af2seq
  ☆46Updated last year
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆51Updated this week
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆41Updated last year
• ohuelab / ColabDesign-cyclic-binder
  ☆37Updated 2 years ago
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆78Updated 3 months ago
• huhlim / alphafold-multistate
  ☆41Updated last year
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆49Updated last month
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆57Updated 6 months ago
• KexinZhangResearch / PhysDock
  Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction
  ☆84Updated 2 months ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆127Updated 3 weeks ago
• Kuhlman-Lab / evopro
  ☆92Updated last month
• regeneron-mpds / propermab
  ☆38Updated 8 months ago
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆24Updated last year
• ELELAB / RosettaDDGPrediction
  ☆83Updated last week
• patrickbryant1 / RareFold
  Structure prediction and design of proteins with noncanonical amino acids
  ☆112Updated last week
• cryoEM-CNIO / BinderFlow
  Code for running BinderFlow
  ☆49Updated 2 weeks ago
• YuzheWangPKU / DiffPepBuilder
  Official repository for DiffPepBuilder and DiffPepDock tools
  ☆110Updated last month
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆46Updated last month
• polizzilab / LASErMPNN
  All-Atom (Including Hydrogen!) Ligand-Conditioned Protein Sequence Design & Sidechain Packing Model
  ☆25Updated this week
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆82Updated 4 months ago
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆41Updated 8 months ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆70Updated last year
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆68Updated 5 months ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆60Updated 2 months ago
• KULL-Centre / _2024_cagiada_stability
  ☆71Updated 8 months ago
• MolecularAI / PepINVENT
  ☆54Updated 8 months ago
• ikalvet / invrotzyme
  Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.
  ☆26Updated 9 months ago
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆61Updated 9 months ago