Alternatives and similar repositories for AbBFN2

Users that are interested in AbBFN2 are comparing it to the libraries listed below

• prescient-design / holo-bench
  Benchmark for Biophysical Sequence Optimization Algorithms
  ☆16Updated 2 weeks ago
• instadeepai / metalic
  Meta in-context learning for protein fitness prediction
  ☆10Updated 3 months ago
• johnyang101 / pmpnndiff
  Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion
  ☆17Updated last year
• barricklab-at-jhu / SVD-of-MSAs
  This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…
  ☆11Updated 9 months ago
• petergroth / FLOP
  This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.
  ☆22Updated last year
• zanderharteveld / genesis
  protein backbone refinement
  ☆15Updated 8 months ago
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆38Updated 11 months ago
• Kuhlman-Lab / PIPPack
  Implementation of Protein Invariant Point Packer (PIPPack)
  ☆32Updated 11 months ago
• LSSI-ETH / meta-learning-for-protein-engineering
  Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…
  ☆20Updated 9 months ago
• mgreenig / IgCraft
  Versatile human antibody sequence design
  ☆14Updated last month
• Marco-Peg / GEP
  ☆14Updated last year
• vsomnath / flexdock
  Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)
  ☆37Updated 2 weeks ago
• nayoung10 / ASSD
  [TMLR 2025] Decoupled Sequence and Structure Generation for Realistic Antibody Design
  ☆5Updated 4 months ago
• instadeepai / protein-sequence-bfn
  Supporting code for our paper "Protein Sequence Modelling with Bayesian Flow Networks"
  ☆42Updated 2 months ago
• JocelynSong / NAEPro
  ☆12Updated last year
• KoubaPetr / Flexpert
  Code for the paper "Learning to engineer protein flexibility".
  ☆17Updated last month
• microsoft / bioemu-benchmarks
  Benchmarking code accompanying the release of `bioemu`
  ☆26Updated 2 weeks ago
• aqlaboratory / insilico_design_pipeline
  In-silico design pipeline for evaluating protein structure diffusion models.
  ☆23Updated 10 months ago
• adaptyvbio / ProtFill
  Inpainting protein sequence and structure
  ☆12Updated last year
• Minys233 / Dynaformer
  ☆31Updated 10 months ago
• ProteinDesignLab / protein_shapes
  Metrics to evaluate distributional coverage of generative models of protein structures.
  ☆10Updated 5 months ago
• compsciencelab / mdCATH
  This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…
  ☆42Updated 5 months ago
• Croydon-Brixton / proteinmpnn_wrapper
  A thin wrapper around ProteinMPNN for convenient sampling without having to write out or consume files
  ☆11Updated last year
• pemami4911 / ppde
  Official repository for "Plug & Play Directed Evolution for Proteins with Gradient-Based Discrete MCMC"
  ☆12Updated last year
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆31Updated 3 weeks ago
• bwicky / oligomer_hallucination
  ☆35Updated last year
• Merck / AbLEF
  Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction
  ☆11Updated last year
• navid-naderi / PLM_SWE
  Implementation code for the paper "Aggregating Residue-Level Protein Language Model Embeddings with Optimal Transport"
  ☆18Updated last week
• PDBeurope / protein-cluster-conformers
  Clusters protein chains based on CA distance difference
  ☆14Updated 3 months ago
• stracquadaniolab / prevent-nf
  PREVENT: PRotein Engineering by Variational frEe eNergy approximaTion
  ☆12Updated 10 months ago