AbBFN2: A flexible antibody foundation model based on Bayesian Flow Networks
☆40Jun 4, 2025Updated last year
Alternatives and similar repositories for AbBFN2
Users that are interested in AbBFN2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Aug 26, 2024Updated last year
- Library for efficient training and application of Machine Learning Interatomic Potentials (MLIP)☆118Updated this week
- ☆17Jan 5, 2024Updated 2 years ago
- Protein prediction models implemented with Modal☆34Jun 21, 2026Updated last week
- ☆20May 15, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Weighted Ensemble Data Analysis and Plotting☆27Dec 11, 2025Updated 6 months ago
- ☆15Jan 31, 2026Updated 5 months ago
- ☆24Nov 28, 2025Updated 7 months ago
- Input files and binding free energy values from our benchmark with QuantumBind-RBFE☆16Apr 16, 2025Updated last year
- Python code to run Thermal Titration Molecular Dynamics (TTMD) simulations☆20Feb 25, 2026Updated 4 months ago
- Design a local part of a protein☆20Jan 12, 2023Updated 3 years ago
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Oct 16, 2022Updated 3 years ago
- ☆18Jun 11, 2026Updated 3 weeks ago
- A Python package to manage protein design workflows on computing clusters and local machines. Documentation can be found here: https://pr…☆44Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Protein design and sculpting using Rosetta and Deep learning methods (RFDiff and Alphafold2)☆55Jun 24, 2026Updated last week
- Toolkit for alphafold3 input and output files☆103Jun 15, 2026Updated 2 weeks ago
- [ICLR 2025 Spotlight] Boltzmann-Aligned Inverse Folding Model as a Predictor of Mutational Effects on Protein-Protein Interactions☆45Mar 10, 2025Updated last year
- ESMDynamic repo☆25Jun 26, 2026Updated last week
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- Rank binders by structure modeling☆17Apr 10, 2026Updated 2 months ago
- SableBind is an open-source framework dedicated to predicting protein-ligand binding affinity☆13Feb 6, 2025Updated last year
- ☆53Jan 10, 2025Updated last year
- Minimal Decision Transformer Implementation written in Jax (Flax).☆18Aug 8, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆24Jul 9, 2024Updated last year
- Knowledge graph enhanced LLM for binding affinity prediction☆14Aug 20, 2024Updated last year
- Predicting mutational effects on protein binding from folding energy. ICML 2025.☆46Aug 4, 2025Updated 10 months ago
- [𝐧𝐚𝐭𝐮𝐫𝐞 𝐦𝐚𝐜𝐡𝐢𝐧𝐞 𝐢𝐧𝐭𝐞𝐥𝐥𝐢𝐠𝐞𝐧𝐜𝐞] ImmunoStruct enables multimodal deep learning for immunogenicity prediction☆46Mar 5, 2026Updated 3 months ago
- Code for NeurIPS 2023 paper "AVIDa-hIL6: A Large-Scale VHH Dataset Produced from an Immunized Alpaca for Predicting Antigen-Antibody Inte…☆21Nov 19, 2024Updated last year
- Extension of ThermoMPNN for double mutant predictions☆63Mar 23, 2026Updated 3 months ago
- HalluDesign, a hallucination-driven all-atom framework for the iterative co-optimization and co-design of protein sequences and structure…☆83Jun 15, 2026Updated 2 weeks ago
- Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.☆76Mar 27, 2025Updated last year
- Code for deep learning guided design of dynamic proteins☆33Jul 16, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- protein structure generation with sparse all-atom denoising models☆63Apr 23, 2026Updated 2 months ago
- Humanness of de-novo designed proteins☆45May 19, 2025Updated last year
- Python based Graphical User Interface for generating input files for and running molecular dynamic simulation.☆10Aug 27, 2024Updated last year
- Structure-based fragment identification in latent space☆30Mar 4, 2026Updated 4 months ago
- mBER - Manifold Binder Engineering and Refinement. mBER enables antibody binder design by leveraging structure templates and sequence con…☆136Apr 27, 2026Updated 2 months ago
- Tool for rapid clustering of antibody models by the structure of their CDRs.☆26Jul 14, 2025Updated 11 months ago
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆38Oct 12, 2022Updated 3 years ago