cailab-tamu / scTenifoldNet
A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data
☆21Updated last month
Alternatives and similar repositories for scTenifoldNet:
Users that are interested in scTenifoldNet are comparing it to the libraries listed below
- benchmark for single-cell RNA-seq imputation methods☆25Updated 11 months ago
- Dynamic models for single-cell RNA-seq time series.☆39Updated 6 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 11 months ago
- Multi-study integration of cellular trajectories☆18Updated 4 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 3 months ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- CiteFuse:☆27Updated 2 years ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆18Updated last year
- ACTIONet single-cell analysis framework☆38Updated 5 months ago
- cTPnet Package☆24Updated 2 years ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 3 years ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆37Updated 3 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆39Updated 5 months ago
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆26Updated 4 years ago
- RNA velocity validation☆23Updated 2 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆20Updated 10 months ago
- R package for transfer learning of single-cell RNA-seq denoising☆29Updated 2 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆24Updated last month
- ☆9Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆36Updated 2 years ago
- ☆18Updated 3 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 3 years ago
- Code for scKINETICS (ISMB 2023)☆21Updated last year
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Regulatory networks with Direct Information in python☆40Updated last year
- Spatially-resolved Transcriptomics via Epitope Anchoring☆18Updated 10 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 3 years ago