A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data
☆30Jan 1, 2025Updated last year
Alternatives and similar repositories for scTenifoldNet
Users that are interested in scTenifoldNet are comparing it to the libraries listed below
Sorting:
- a deep generative model for single-cell survival analysis☆16Dec 2, 2025Updated 3 months ago
- ☆14Jul 27, 2025Updated 7 months ago
- SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression pro…☆14Oct 16, 2017Updated 8 years ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆24Jun 10, 2025Updated 8 months ago
- Pipeline for the generation and simulation of personalized Flux Balance Analysis models☆11Feb 14, 2021Updated 5 years ago
- Post hoc cell type classification of single-cell RNA-sequencing data.☆10Oct 5, 2021Updated 4 years ago
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and …☆14Dec 5, 2025Updated 3 months ago
- Use batch balanced KNN (BBKNN) in R☆13Sep 9, 2025Updated 5 months ago
- Methods for inferring undirected networks from data☆47Mar 17, 2021Updated 4 years ago
- This is a curated list of tutorials, projects, libraries, videos, papers, books and anything related to applications of Deep Learning to …☆15Sep 7, 2025Updated 5 months ago
- Client to access ExperimentHub resources☆11Oct 30, 2025Updated 4 months ago
- deconvolution for RNAseq and bisulfite sequencing☆11Aug 17, 2020Updated 5 years ago
- sharing interactive single cell gene expression visualizations from Seurat☆11May 18, 2023Updated 2 years ago
- Python playground for cell-type-specific biology☆12Jan 20, 2026Updated last month
- Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆10Apr 16, 2020Updated 5 years ago
- Evaluation of Cell Type Annotation R Packages on Single Cell RNA-seq Data☆29Feb 20, 2024Updated 2 years ago
- BEELINE: evaluation of algorithms for gene regulatory network inference☆208Updated this week
- ☆12Sep 29, 2023Updated 2 years ago
- Tumor-Infiltrating CD8 Lymphocytes states prediction☆14Feb 7, 2024Updated 2 years ago
- ☆12Sep 30, 2025Updated 5 months ago
- Initial recommendations for performing, benchmarking, and reporting single-cell proteomics experiments. The code is distributed under an …☆12Apr 5, 2023Updated 2 years ago
- Identify cell type based on cell markers for single cell squencing☆11Jul 10, 2024Updated last year
- A tissue-specific single-cell biological age model☆13Jul 26, 2023Updated 2 years ago
- BioCarta pathway images☆11Jan 30, 2026Updated last month
- Kinship In Mixed Model Analysis of RNA-seq☆15Apr 14, 2025Updated 10 months ago
- ☆14Sep 1, 2022Updated 3 years ago
- A browser extension and web application for extracting gene sets from GEO and piping them to Enrichr.☆14May 1, 2023Updated 2 years ago
- Here I show how to use Convolutional Neural Networks (CNNs) for Ancient DNA analysis☆15Apr 24, 2019Updated 6 years ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆168Jan 26, 2026Updated last month
- R functions underlying OmicsNet☆20Feb 10, 2026Updated 3 weeks ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆66Feb 10, 2026Updated 3 weeks ago
- TFregulomeR reveals transcription factors’ context-specific features and functions☆15Apr 18, 2022Updated 3 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Oct 11, 2018Updated 7 years ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆17Apr 15, 2025Updated 10 months ago
- Bostongene cell deconvolution algorithm from RNAseq☆60Jan 15, 2024Updated 2 years ago
- This is a read-only mirror of the CRAN R package repository. TOmicsVis — Transcriptome Visualization Process Scheme. Homepage: https://…☆16Aug 28, 2023Updated 2 years ago
- GrandPrix☆16May 27, 2019Updated 6 years ago
- ☆14Jun 10, 2025Updated 8 months ago
- ☆18Nov 24, 2024Updated last year