A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data
☆39Jul 10, 2026Updated 2 weeks ago
Alternatives and similar repositories for scTenifoldNet
Users that are interested in scTenifoldNet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression pro…☆15Oct 16, 2017Updated 8 years ago
- ☆14May 3, 2026Updated 2 months ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆273Jul 10, 2026Updated 2 weeks ago
- cEll tyPe enrIChment☆17Dec 11, 2022Updated 3 years ago
- fastCNV R package to detect putative CNVs in single cell and spatial transcriptomics data☆51Jul 9, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package for single-cell comparative regulatory analysis☆12Jun 26, 2021Updated 5 years ago
- ☆11Dec 17, 2025Updated 7 months ago
- ☆17Apr 2, 2023Updated 3 years ago
- ☆19May 5, 2020Updated 6 years ago
- a deep generative model for single-cell survival analysis☆26Dec 2, 2025Updated 7 months ago
- Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.☆15Jul 16, 2023Updated 3 years ago
- Python implementation of scTenifoldNet and scTenifoldKnk workflows.☆68May 19, 2026Updated 2 months ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated last year
- Evaluation of Cell Type Annotation R Packages on Single Cell RNA-seq Data☆30Feb 20, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆11Mar 10, 2022Updated 4 years ago
- PCaDB - a comprehensive and interactive database for transcriptomes from prostate cancer population cohorts☆10Dec 29, 2021Updated 4 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆14Aug 22, 2017Updated 8 years ago
- SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation☆50Dec 12, 2019Updated 6 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆27Mar 3, 2020Updated 6 years ago
- Machine learning-based approach for the inference of gene regulatory networks from expression data.☆102Sep 24, 2021Updated 4 years ago
- Scalable inference of gene regulatory networks using Apache Spark and XGBoost☆22Feb 8, 2018Updated 8 years ago
- Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks☆28Apr 3, 2026Updated 3 months ago
- Methods for inferring undirected networks from data☆47Mar 17, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Identify cell type based on cell markers for single cell squencing☆12Jul 10, 2024Updated 2 years ago
- Python playground for cell-type-specific biology☆14Jul 10, 2026Updated 2 weeks ago
- A computational framework☆18Updated this week
- R vignettes for processing BUS format single-cell RNA-seq files☆21Feb 8, 2020Updated 6 years ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Jun 10, 2025Updated last year
- BEELINE: evaluation of algorithms for gene regulatory network inference☆213Jul 11, 2026Updated 2 weeks ago
- SenePy is a set of tools to score single-cells based on their expression of cell-specific senescence markers. Please see the following pu…☆59Jan 30, 2025Updated last year
- SIDISH: Semi-supervised Iterative Deep Learning for Identifying Single-cell High-risk Populations☆23Jan 23, 2026Updated 6 months ago
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆37Mar 10, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Deep Learning Can Identify Explainable Reasoning Paths of Mechanism of Drug Action for Drug Repurposing from Multilayer Biological Networ…☆12Aug 19, 2024Updated last year
- Methods to discover gene programs on single-cell data☆198Updated this week
- TRAjectory-based Differential Expression analysis for SEQuencing data☆306Jun 17, 2025Updated last year
- sharing interactive single cell gene expression visualizations from Seurat☆13May 18, 2023Updated 3 years ago
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆46Apr 12, 2023Updated 3 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆35Apr 4, 2025Updated last year