A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data
☆46Sep 29, 2026Updated last month
Alternatives and similar repositories for scTenifoldNet
Users that are interested in scTenifoldNet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15May 3, 2026Updated 6 months ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆309Oct 8, 2026Updated 3 weeks ago
- SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression pro…☆15Oct 16, 2017Updated 9 years ago
- Local Spatial Gradient Inference☆12Jul 28, 2025Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆35Aug 16, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆10Sep 2, 2024Updated 2 years ago
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆12May 31, 2024Updated 2 years ago
- ☆13Jul 28, 2026Updated 3 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆253Aug 7, 2024Updated 2 years ago
- SIDISH: Semi-supervised Iterative Deep Learning for Identifying Single-cell High-risk Populations☆26Jul 30, 2026Updated 3 months ago
- Spatial Cellular Estimator for Tumors☆67Sep 27, 2026Updated last month
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆19Apr 15, 2025Updated last year
- Identify cell type based on cell markers for single cell squencing☆12Jul 10, 2024Updated 2 years ago
- ☆15Aug 18, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- RcisTarget: Transcription factor binding motif enrichment☆50Mar 4, 2024Updated 2 years ago
- ☆24Updated this week
- An eXplainable Cell-specific machine learning method to predict clinical Phenotypes using single-cell multi-omics☆17Sep 23, 2025Updated last year
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆36Jul 23, 2026Updated 3 months ago
- Monte Carlo Reference-based Consensus Clustering☆38Mar 14, 2020Updated 6 years ago
- Single Cell Analysis Operations☆18Jun 24, 2026Updated 4 months ago
- Post hoc cell type classification of single-cell RNA-sequencing data.☆11Oct 5, 2021Updated 5 years ago
- sharing interactive single cell gene expression visualizations from Seurat☆13May 18, 2023Updated 3 years ago
- ☆12Dec 17, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Secreted Protein Activity Inference☆34Jul 31, 2026Updated 3 months ago
- R package for single cell and other data analysis using diffusion maps☆114Oct 21, 2026Updated 2 weeks ago
- Use batch balanced KNN (BBKNN) in R☆14Sep 9, 2025Updated last year
- CCCvelo: Decoding dynamic cell-cell communication-driven cell state transitions in spatial transcriptomics☆14Sep 14, 2026Updated last month
- fastCNV R package to detect putative CNVs in single cell and spatial transcriptomics data☆55Sep 24, 2026Updated last month
- R package BioPred☆11Jun 7, 2024Updated 2 years ago
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆38Mar 10, 2025Updated last year
- An R library for conducting analyses on COMPASS data.☆20Jun 10, 2021Updated 5 years ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆77Oct 16, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- cEll tyPe enrIChment☆17Dec 11, 2022Updated 3 years ago
- ☆12May 14, 2025Updated last year
- SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation☆50Dec 12, 2019Updated 6 years ago
- R functions underlying OmicsNet☆21Updated this week
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆93Mar 19, 2026Updated 7 months ago
- ☆17Apr 2, 2023Updated 3 years ago
- A classifier for tumor microenvironment subtype based on ensemble machine learning models☆11Jul 20, 2025Updated last year