qianhuiSenn / scRNA_cell_deconv_benchmarkLinks
Evaluation of Cell Type Annotation R Packages on Single Cell RNA-seq Data
☆29Updated last year
Alternatives and similar repositories for scRNA_cell_deconv_benchmark
Users that are interested in scRNA_cell_deconv_benchmark are comparing it to the libraries listed below
Sorting:
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 5 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Dichotomous of innate immune landscape☆17Updated 6 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- ☆47Updated 5 years ago
- A portable and fast single cell type identifier☆63Updated 4 years ago
- ☆30Updated 7 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- ☆63Updated 5 years ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 4 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 4 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆81Updated 7 months ago
- ☆55Updated 5 years ago
- Code for the MNN manuscript figures☆49Updated 7 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆45Updated 4 years ago
- ☆43Updated 5 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆46Updated 4 years ago
- Normalize CITEseq Data☆66Updated 2 months ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.☆43Updated 8 years ago
- ☆48Updated last year
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…☆47Updated 3 years ago