qianhuiSenn / scRNA_cell_deconv_benchmarkLinks
Evaluation of Cell Type Annotation R Packages on Single Cell RNA-seq Data
☆29Updated last year
Alternatives and similar repositories for scRNA_cell_deconv_benchmark
Users that are interested in scRNA_cell_deconv_benchmark are comparing it to the libraries listed below
Sorting:
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 4 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆45Updated last year
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆42Updated 4 years ago
- R code for single-cell analysis of intestinal epithelial cells☆22Updated 7 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- ☆16Updated 6 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Code for the MNN manuscript figures☆50Updated 6 years ago
- R-code used for single-cell RNA-Seq analysis of kidney data.☆17Updated 5 years ago
- R package for robust clustering of single cell RNA sequencing data☆39Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- InstaPrism is an R package for fast implementation of BayesPrism☆36Updated last year
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆33Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 2 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 9 years ago
- ☆20Updated 6 years ago
- Clone of the Bioconductor repository for the scran package.☆42Updated 9 months ago
- Analysis of single cell RNA-seq data from innate lympoid cells☆15Updated 7 years ago
- scWGCNA☆60Updated 2 years ago
- ☆22Updated 5 years ago
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago