qianhuiSenn / scRNA_cell_deconv_benchmarkLinks
Evaluation of Cell Type Annotation R Packages on Single Cell RNA-seq Data
☆29Updated last year
Alternatives and similar repositories for scRNA_cell_deconv_benchmark
Users that are interested in scRNA_cell_deconv_benchmark are comparing it to the libraries listed below
Sorting:
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 5 years ago
- ☆55Updated 4 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- ☆17Updated 6 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…☆43Updated 3 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆42Updated 4 years ago
- An R-based interface for loom files☆67Updated 5 years ago
- ☆47Updated 9 months ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Clone of the Bioconductor repository for the batchelor package.☆17Updated 6 months ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆79Updated 3 months ago
- ☆63Updated 5 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆78Updated 7 months ago
- Code for the MNN manuscript figures☆50Updated 7 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆45Updated 9 years ago
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆43Updated 4 years ago
- Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omic…☆41Updated 6 years ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆53Updated 2 months ago