ycli1995 / bbknnRLinks
Use batch balanced KNN (BBKNN) in R
☆13Updated 4 months ago
Alternatives and similar repositories for bbknnR
Users that are interested in bbknnR are comparing it to the libraries listed below
Sorting:
- Core utilities for single-cell RNA-seq☆12Updated 9 months ago
- R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases☆23Updated last week
- A common data format and inference environment for single-cell trajectories 📦☆19Updated 2 months ago
- ☆27Updated 8 months ago
- R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)☆36Updated last year
- Gene-level general linear mixed model☆24Updated 4 months ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆54Updated 2 weeks ago
- digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data☆15Updated last year
- R package to do enrichment analysis for neoantigens☆13Updated 3 years ago
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- This repository contained single-cell RNA-seq datasets with ICB treated patients☆13Updated last year
- CellAnn☆12Updated 2 years ago
- An R package for visualising cell-cell interactions☆46Updated last year
- Bioconductor components for general cancer genomics☆11Updated 3 years ago
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆11Updated last year
- Functions to analyze copy number aberrations in single-cell data☆13Updated last year
- R package for detecting differential distributions using a statistical test based on the wasserstein distance☆27Updated 3 months ago
- An R package to calculate Dynamical Network Biomarkers (DNB).☆10Updated 3 years ago
- Code to reproduce TNBC analysis and figures☆24Updated 3 years ago
- See https://github.com/LTLA/SingleRBook for the latest version of this content.☆12Updated 3 years ago
- Automatic selection of number of principal components☆17Updated 3 years ago
- ☆16Updated 10 months ago
- ☆11Updated 2 years ago
- Human brain, >200,000 nuclei☆23Updated 4 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆29Updated 3 months ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆41Updated last year
- BioCarta pathway images☆11Updated last week
- ☆13Updated 10 months ago
- R package for querying the DrugBank database in batch locally☆37Updated 4 years ago
- cross-species analysis of cell identities, markers and regulations☆12Updated 6 months ago