Alternatives and similar repositories for bbknnR:

Users that are interested in bbknnR are comparing it to the libraries listed below

• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆20Updated 2 months ago
• jokergoo / BioCartaImage
  BioCarta pathway images
  ☆11Updated last year
• XSLiuLab / tumor-immunogenicity-score
  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
  ☆31Updated 3 years ago
• Simon-Leonard / FlexDotPlot
  R package for Flexible dot plots
  ☆29Updated 2 years ago
• Pinlyu3 / CellAnn_shinyapp
  CellAnn
  ☆12Updated last year
• MahnoorNGondal / scRNA-seq-ICB-cohorts
  This repository contained single-cell RNA-seq datasets with ICB treated patients
  ☆9Updated 4 months ago
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 3 years ago
• liuhong-jia / scAnno
  ☆24Updated last year
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆31Updated last year
• kharchenkolab / sccore
  Core utilities for single-cell RNA-seq
  ☆12Updated 3 months ago
• gpli / DNB
  An R package to calculate Dynamical Network Biomarkers (DNB).
  ☆9Updated 2 years ago
• Sarah145 / CCPlotR
  An R package for visualising cell-cell interactions
  ☆43Updated 7 months ago
• WeersmaLabIBD / SingleCell
  ☆9Updated last year
• karissawhiting / cbioportalR
  R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases
  ☆22Updated 4 months ago
• TransBioInfoLab / TNBC_analysis
  Code to reproduce TNBC analysis and figures
  ☆23Updated 2 years ago
• diegommcc / digitalDLSorteR
  digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data
  ☆11Updated 4 months ago
• jmonlong / scCNAutils
  Functions to analyze copy number aberrations in single-cell data
  ☆11Updated last month
• DongqiangZeng0808 / Blasso
  Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers
  ☆20Updated 2 years ago
• AlexandrovLab / SigProfilerMatrixGeneratorR
  R wrapper for utilizing the SigProfilerMatrixGenerator framework
  ☆20Updated 2 years ago
• dosorio / SCORPION
  Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…
  ☆9Updated last year
• GregorySchwartz / tooManyCellsR
  An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.
  ☆25Updated 5 years ago
• SingleR-inc / SingleRBook-base
  See https://github.com/LTLA/SingleRBook for the latest version of this content.
  ☆12Updated 2 years ago
• markziemann / mitch
  An R package for multi-dimensional pathway enrichment analysis
  ☆16Updated 3 months ago
• junjunlab / bulkPseudotime
  Pseudotime Analysis for Bulk Data
  ☆16Updated 7 months ago
• haotian-zhuang / findPC
  Automatic selection of number of principal components
  ☆15Updated 2 years ago
• lydiaMyr / ImmuCellAI
  ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset includi…
  ☆14Updated last year
• taoshengxu / CancerSubtypes
  ☆16Updated 2 years ago
• theislab / enrichment_analysis_celltype
  Cell type enrichment analysis using gene signatures and cluster markers
  ☆9Updated 7 years ago
• carmonalab / ProjecTILs_CaseStudies
  A repository of case studies using ProjecTILs
  ☆14Updated 8 months ago
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 3 years ago