ycli1995 / bbknnR
Use batch balanced KNN (BBKNN) in R
☆10Updated 10 months ago
Alternatives and similar repositories for bbknnR:
Users that are interested in bbknnR are comparing it to the libraries listed below
- Gene-level general linear mixed model☆21Updated 3 months ago
- Automatic selection of number of principal components☆15Updated 2 years ago
- This repository contained single-cell RNA-seq datasets with ICB treated patients☆9Updated 6 months ago
- BioCarta pathway images☆11Updated last year
- An R package to calculate Dynamical Network Biomarkers (DNB).☆9Updated 2 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆31Updated 3 years ago
- R package for Flexible dot plots☆29Updated 2 years ago
- ☆24Updated 2 years ago
- CellAnn☆12Updated last year
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆9Updated last year
- Core utilities for single-cell RNA-seq☆12Updated 3 weeks ago
- R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases☆22Updated 5 months ago
- An R package for visualising cell-cell interactions☆44Updated 8 months ago
- R package for benchmarking single cell analysis methods☆31Updated last year
- ☆9Updated last year
- A repository of case studies using ProjecTILs☆14Updated 9 months ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- Cell type enrichment analysis using gene signatures and cluster markers☆9Updated 7 years ago
- Functions to analyze copy number aberrations in single-cell data☆12Updated 3 months ago
- cross-species analysis of cell identities, markers and regulations☆12Updated last month
- Code to reproduce TNBC analysis and figures☆23Updated 2 years ago
- ☆10Updated 3 months ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers☆20Updated 2 years ago
- A database of useful gene signatures for single-cell analysis☆21Updated last year
- See https://github.com/LTLA/SingleRBook for the latest version of this content.☆12Updated 2 years ago
- cEll tyPe enrIChment☆14Updated 2 years ago
- Efficiently compute robust markers across single-cell datasets☆11Updated 4 years ago
- ☆29Updated 6 years ago