rosedu1 / deconvSeqLinks
deconvolution for RNAseq and bisulfite sequencing
☆10Updated 5 years ago
Alternatives and similar repositories for deconvSeq
Users that are interested in deconvSeq are comparing it to the libraries listed below
Sorting:
- sharing interactive single cell gene expression visualizations from Seurat☆10Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 4 months ago
- Functional Annotation for Single-Cell Transcriptomics☆10Updated last year
- ☆10Updated this week
- Waelchli-lab / Single-cell-atlas-of-the-human-brain-vasculature-accross-development-adulthood-and-diseaseMolecular atlas of the human brain vasculature accross development, adulthood and disease at the single-cell level☆13Updated last year
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- ☆17Updated 2 years ago
- 10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC☆23Updated 3 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Difference in Intercellular Communication from scRNA-seq data☆22Updated last year
- An R package for visualising cell-cell interactions☆44Updated last year
- ☆18Updated 2 years ago
- Computational pipeline to process EasySci-RNA data.☆21Updated last year
- ☆10Updated 3 months ago
- ☆23Updated 3 years ago
- scripts for analyzing data of macrophage development in human☆10Updated 5 years ago
- This repository contains all analysis scripts used to explore single cell datasets for: Jardine and Webb et al., 2021, "Blood and immune …☆13Updated 3 years ago
- Landscape Single Cell Entropy☆20Updated 5 years ago
- ☆13Updated 4 years ago
- ☆18Updated last year
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆15Updated last year
- Code to reproduce TNBC analysis and figures☆24Updated 3 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 10 months ago
- R package for Bioconductor submission☆37Updated 2 years ago