Murali-group / BeelineLinks
BEELINE: evaluation of algorithms for gene regulatory network inference
☆187Updated last week
Alternatives and similar repositories for Beeline
Users that are interested in Beeline are comparing it to the libraries listed below
Sorting:
- Machine learning-based approach for the inference of gene regulatory networks from expression data.☆83Updated 3 years ago
- Batch balanced KNN☆161Updated last year
- Benchmarking analysis of data integration tools☆358Updated 4 months ago
- Benchmarking computational single cell ATAC-seq methods☆183Updated 4 years ago
- spatial transcriptome, single cell☆68Updated 2 years ago
- Models and datasets for perturbational single-cell omics☆152Updated 2 years ago
- ☆81Updated last year
- Differential expression analysis for single-cell RNA-seq data.☆198Updated 3 months ago
- Reference mapping for single-cell genomics☆368Updated 2 weeks ago
- ☆126Updated 11 months ago
- Single-cell ATAC-seq analysis via Latent feature Extraction☆102Updated last year
- Perturbation Analysis in the scverse ecosystem.☆178Updated this week
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆128Updated 3 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆224Updated 4 months ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆168Updated 10 months ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆193Updated 2 weeks ago
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆218Updated 10 months ago
- ☆130Updated last year
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆211Updated last year
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆132Updated 2 years ago
- SingleCellNet: classify single cells across species and platforms☆137Updated last year
- Episcanpy: Epigenomics Single Cell Analysis in Python☆144Updated 6 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆160Updated 2 months ago
- Detect doublets in single-cell RNA-seq data☆151Updated 4 years ago
- Scanpy Tutorials.☆214Updated this week
- Additional code and analysis from the single-cell integration benchmarking project☆65Updated 2 years ago
- Python package to perform enrichment analysis from omics data.☆196Updated this week
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆218Updated 5 years ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆42Updated last year
- A simulator for single-cell expression data guided by gene regulatory networks☆61Updated last year