Murali-group / BeelineLinks
BEELINE: evaluation of algorithms for gene regulatory network inference
☆191Updated last week
Alternatives and similar repositories for Beeline
Users that are interested in Beeline are comparing it to the libraries listed below
Sorting:
- Models and datasets for perturbational single-cell omics☆153Updated 2 years ago
- Machine learning-based approach for the inference of gene regulatory networks from expression data.☆83Updated 3 years ago
- ☆82Updated 2 years ago
- A simulator for single-cell expression data guided by gene regulatory networks☆63Updated last year
- Graph-linked unified embedding for single-cell multi-omics data integration☆415Updated 3 weeks ago
- Additional code and analysis from the single-cell integration benchmarking project☆67Updated 2 years ago
- Perturbation Analysis in the scverse ecosystem.☆185Updated this week
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆223Updated 5 years ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆129Updated 4 months ago
- Single-cell ATAC-seq analysis via Latent feature Extraction☆102Updated last year
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆201Updated 2 weeks ago
- Batch balanced KNN☆165Updated last year
- Benchmarking analysis of data integration tools☆363Updated 6 months ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆142Updated last year
- ☆100Updated 2 years ago
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆221Updated last year
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆272Updated 5 months ago
- Deep count autoencoder for denoising scRNA-seq data☆260Updated last year
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆102Updated 11 months ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆171Updated 11 months ago
- Multi-omic single-cell optimal transport tools☆164Updated this week
- SIMBA: SIngle-cell eMBedding Along with features☆63Updated 8 months ago
- A software package for analyzing snapshots of developmental processes☆146Updated 2 years ago
- ☆131Updated last year
- Formalizing and benchmarking open problems in single-cell genomics☆363Updated last week
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆133Updated 2 years ago
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆97Updated 5 months ago
- Git Repo for simulating Boolean Models☆35Updated last year
- Reference mapping for single-cell genomics☆374Updated last month
- ☆108Updated last month