NikolayOskolkov / DeepLearningAncientDNALinks
Here I show how to use Convolutional Neural Networks (CNNs) for Ancient DNA analysis
☆15Updated 6 years ago
Alternatives and similar repositories for DeepLearningAncientDNA
Users that are interested in DeepLearningAncientDNA are comparing it to the libraries listed below
Sorting:
- Contains the code from "Learning the Sequence Determinants of Alternative Splicing from Millions of Random Sequences"☆36Updated 9 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆84Updated 2 months ago
- Materials for Spring 2018 Applied Genomics Course☆79Updated 6 years ago
- ☆39Updated last month
- PHAST☆74Updated last week
- A Strategy for Building and Using a Human Reference Pangenome☆70Updated 5 years ago
- ☆50Updated 6 years ago
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆47Updated 4 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 5 months ago
- A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.☆15Updated 6 years ago
- Genomics data visualization in Python by using matplotlib.☆65Updated last year
- Web site for the class EE 372 : Data Science for High-Throughput Sequencing at Stanford☆68Updated 3 years ago
- Manhattan plot Generator☆25Updated 5 years ago
- Galaxy RNA workbench☆40Updated 4 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Extract data quickly from Juicebox via straw☆69Updated 4 months ago
- The wiki repo, with pull request enabled, for the rnaseq_tutorial☆26Updated 5 years ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated 8 months ago
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆85Updated last month
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 5 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆50Updated 8 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆36Updated 5 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 7 months ago
- mtDNA Variant Caller☆34Updated 7 months ago
- The script presents a simple way to visualize features on human chromosome ideograms☆42Updated 3 months ago
- ☆45Updated 8 years ago