CABSEL / SINCERITIES
SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression profiles.
☆13Updated 7 years ago
Alternatives and similar repositories for SINCERITIES:
Users that are interested in SINCERITIES are comparing it to the libraries listed below
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 3 years ago
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆23Updated 9 months ago
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆26Updated 5 years ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆23Updated 4 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- Regulatory networks with Direct Information☆16Updated 5 years ago
- benchmark for single-cell RNA-seq imputation methods☆25Updated last year
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆19Updated last year
- Information-based dimensionality reduction☆29Updated 4 months ago
- Multi-study integration of cellular trajectories☆19Updated 4 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆17Updated 4 months ago
- cTPnet Package☆25Updated 2 years ago
- ☆18Updated 3 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆42Updated last year
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Updated 2 years ago
- ☆35Updated 2 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆26Updated 2 years ago
- Benchmark of GRNs using the GRETA pipeline☆24Updated last month
- Code for scKINETICS (ISMB 2023)☆21Updated last year
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆32Updated last year
- A single cell sequencing read simulator.☆27Updated 6 months ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15Updated 3 years ago
- ☆34Updated 2 years ago
- TRUST4 manuscript evaluation☆14Updated 2 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆20Updated last year
- Code associated with MIX-seq manuscript☆15Updated 4 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- single cell Gene co-Expression Network Analysis☆9Updated 2 years ago