CABSEL / SINCERITIESLinks
SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression profiles.
☆14Updated 8 years ago
Alternatives and similar repositories for SINCERITIES
Users that are interested in SINCERITIES are comparing it to the libraries listed below
Sorting:
- ☆19Updated 4 years ago
- benchmark for single-cell RNA-seq imputation methods☆29Updated last year
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 4 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- ☆37Updated 9 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Updated 2 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 3 months ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆24Updated 11 months ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- ACTIONet single-cell analysis framework☆44Updated last year
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15Updated 3 years ago
- ☆43Updated 3 years ago
- ☆10Updated 3 years ago
- Population balance analysis☆44Updated 6 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Fast motif matching in R☆46Updated last year
- Epimap processing and analysis code repository☆33Updated 3 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Single Cell Consensus Clustering with Speed☆20Updated 2 years ago
- Benchmark of GRNs using the GRETA pipeline☆29Updated last week
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 9 months ago
- scGRO-seq analyses codes☆13Updated last year
- Information-based dimensionality reduction☆29Updated 11 months ago
- High-definition modeling of chromatin + transcriptomics data☆25Updated 7 months ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆38Updated 6 years ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆54Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago