MaayanLab / rummageneLinks
☆12Updated 3 months ago
Alternatives and similar repositories for rummagene
Users that are interested in rummagene are comparing it to the libraries listed below
Sorting:
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- simplified cellranger for long-read data☆19Updated 4 months ago
- xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, …☆34Updated last month
- Snakemake pipeline for running MAJIQ☆23Updated 2 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Explore the cancer relevance of your gene list☆52Updated 2 weeks ago
- Builds a PEP from SRA or GEO accessions☆54Updated 3 weeks ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆17Updated last year
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.☆41Updated 2 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- interactive plots for differential expression analysis☆34Updated 6 months ago
- ☆10Updated 2 years ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 3 years ago
- Accompanying analysis code for the FRASER manuscript☆26Updated 5 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆36Updated 3 years ago
- Rapid and accurate ancestry inference using SNVs.☆28Updated 4 months ago
- A Transcriptomics-Proteomics Integration Pipeline☆18Updated last year
- ☆18Updated 5 years ago
- A script to make downloading of SRA/GEO data easier☆33Updated 2 years ago
- iread☆25Updated 4 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆20Updated 2 months ago
- ☆20Updated 6 years ago
- Refining the impact of genetic evidence on clinical success☆27Updated last year
- ☆20Updated 2 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated 3 weeks ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated last month