☆12Sep 30, 2025Updated 5 months ago
Alternatives and similar repositories for rummagene
Users that are interested in rummagene are comparing it to the libraries listed below
Sorting:
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆30Feb 22, 2026Updated last week
- a deep generative model for single-cell survival analysis☆16Dec 2, 2025Updated 2 months ago
- ☆17May 5, 2020Updated 5 years ago
- A browser extension and web application for extracting gene sets from GEO and piping them to Enrichr.☆14May 1, 2023Updated 2 years ago
- Kinship In Mixed Model Analysis of RNA-seq☆15Apr 14, 2025Updated 10 months ago
- Long RNA-seq analysis workflow☆22Oct 13, 2025Updated 4 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆24Jun 10, 2025Updated 8 months ago
- A straightforward and complete next-generation sequencing read simulator☆22Feb 18, 2024Updated 2 years ago
- Tools for finding mobile element insertions from single-end datasets☆24Dec 14, 2019Updated 6 years ago
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆27Aug 9, 2023Updated 2 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Aug 9, 2022Updated 3 years ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆29Jan 1, 2025Updated last year
- A collection of commonly used resources for complex trait genetics.☆37Feb 10, 2026Updated 2 weeks ago
- 361 Division - Scientific Training, Education and Learning☆28Oct 1, 2020Updated 5 years ago
- R package for WebGestalt☆38Dec 5, 2025Updated 2 months ago
- Feature selection package of the mlr3 ecosystem.☆38Dec 13, 2025Updated 2 months ago
- DNA copy number detection from off-target sequence data☆33May 17, 2018Updated 7 years ago
- Import script needed to build FluPRINT database from source☆11May 23, 2019Updated 6 years ago
- Minimal scripts to reproduce the RADICL-seq analysis of the Nature Communications manuscript☆11Jan 30, 2020Updated 6 years ago
- Repository☆10Oct 23, 2024Updated last year
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 3 years ago
- A high-throughput analysis framework for Y-chromosomal next-generation sequencing data☆14Jun 11, 2021Updated 4 years ago
- ☆13May 27, 2025Updated 9 months ago
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated 11 months ago
- TR annotation tool VAMPIRE☆18Jan 29, 2026Updated last month
- ☆10May 31, 2022Updated 3 years ago
- A proof of concept RNA-Seq pipeline with Nextflow☆33Jan 13, 2021Updated 5 years ago
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆91Sep 26, 2023Updated 2 years ago
- This is a read-only mirror of the CRAN R package repository. arulesSequences — Mining Frequent Sequences☆10Nov 25, 2025Updated 3 months ago
- ☆13Feb 12, 2026Updated 2 weeks ago
- RNA-seq data amalgamation for a large-scale evolutionary transcriptomics☆12Updated this week
- ☆10Nov 3, 2023Updated 2 years ago
- Run multiple Pipeline5 instances at once☆11Jun 6, 2025Updated 8 months ago
- This repository contains example patterns for storing large objects with DynamoDB.☆13Jun 19, 2024Updated last year
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆10May 12, 2025Updated 9 months ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- A web application framework for analysis and visualization of High throughput Sequencing metagenomic data☆10Nov 21, 2016Updated 9 years ago
- lncRNA-Py is a development package for applying machine learning and deep learning to the problem of lncRNA classification, i.e. predicti…☆12Jan 24, 2025Updated last year
- ☆12Jan 10, 2023Updated 3 years ago