MaayanLab / rummagene
☆10Updated 4 months ago
Alternatives and similar repositories for rummagene
Users that are interested in rummagene are comparing it to the libraries listed below
Sorting:
- ☆20Updated last year
- Explore the cancer relevance of your gene list☆51Updated 2 months ago
- R Shiny application for cross omics data analysis. In revision with Bioinformatics Adv.☆25Updated 2 weeks ago
- Snakemake pipeline for running MAJIQ☆22Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆12Updated last year
- An R/Bioconductor package to identify higher-order molecular phenotypes☆15Updated last year
- ☆18Updated last month
- Refining the impact of genetic evidence on clinical success☆25Updated 10 months ago
- ☆43Updated 6 months ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆10Updated 6 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated last month
- (aka sc-atlasing-toolbox) Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases☆27Updated last week
- Python playground for cell-type-specific biology☆10Updated last week
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 11 months ago
- Mean Alterations Using Discrete Expression☆14Updated last year
- ☆15Updated 3 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆18Updated last month
- Using BCR and expression for sequence embedding☆21Updated last month
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆14Updated 7 months ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆18Updated last month
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Chromatin ACcessibility and Transcriptomics Unifying Software☆16Updated 6 months ago
- Signac☆25Updated 2 years ago
- ☆12Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆42Updated last year
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- TRUST4 manuscript evaluation☆14Updated 2 years ago
- ☆12Updated 4 years ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆11Updated last week