Alternatives and similar repositories for SCP_recommendations:

Users that are interested in SCP_recommendations are comparing it to the libraries listed below

• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆58Updated last week
• TencentAILabHealthcare / scTranslator
  ☆36Updated 8 months ago
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆29Updated 4 months ago
• doraadong / UNIFAN
  Unsupervised cell functional annotation for single-cell RNA-Seq
  ☆22Updated 2 years ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆48Updated 2 months ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆71Updated 3 months ago
• JEFworks-Lab / veloviz
  RNA-velocity informed embeddings for visualizing cellular trajectories
  ☆43Updated 2 years ago
• TheHumphreysLab / MALDIpy
  MALDIpy: a Python package for single-cell analysis of imaging mass spectrometry data (Cell Metabolism 2024)
  ☆12Updated 10 months ago
• theislab / scTab
  ☆57Updated 6 months ago
• bfurtwa / SCeptre
  SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.
  ☆13Updated last year
• theislab / prophet
  ☆30Updated last week
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆59Updated last month
• scverse / spatialdata-notebooks
  ☆52Updated this week
• suinleelab / contrastiveVI
  ☆53Updated last year
• alexandrovteam / SpaceM
  ☆14Updated 6 months ago
• cellatlas / human
  ☆42Updated 5 months ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆52Updated 10 months ago
• SchubertLab / mvTCR_reproducibility
  Reproducibility Repo for mvTCR paper
  ☆13Updated last year
• saezlab / omnipath
  Python client for the OmniPath web service
  ☆44Updated last month
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆38Updated 6 months ago
• scverse / muon-tutorials
  Tutorials for multimodal omics data analysis
  ☆14Updated last month
• UCLouvain-CBIO / scp
  Single cell proteomics data processing
  ☆26Updated last week
• LungCellAtlas / HLCA
  ☆55Updated last year
• bowang-lab / IntegrAO
  Integrate Any Omics: Towards genome-wide data integration for patient stratification
  ☆48Updated 3 weeks ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆38Updated 6 months ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆34Updated last month
• hemberg-lab / sc3s
  Single Cell Consensus Clustering with Speed
  ☆21Updated 2 years ago
• shooshtarilab / TMExplorer
  A collection of tumour microenvironment single-cell RNA sequencing datasets for use in R and other pipelines.
  ☆18Updated 2 years ago
• SchubertLab / mvTCR
  ☆51Updated 5 months ago
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆56Updated 10 months ago