SlavovLab / SCP_recommendationsLinks
Initial recommendations for performing, benchmarking, and reporting single-cell proteomics experiments. The code is distributed under an MIT license.
☆12Updated 2 years ago
Alternatives and similar repositories for SCP_recommendations
Users that are interested in SCP_recommendations are comparing it to the libraries listed below
Sorting:
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆44Updated 2 weeks ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆33Updated last year
- ☆55Updated last year
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆50Updated 6 months ago
- Multi-modal single cell analysis pipelines☆59Updated 3 weeks ago
- MultiMAP for integration of single cell multi-omics☆56Updated last year
- ☆26Updated 5 years ago
- ☆59Updated 10 months ago
- Single Cell Consensus Clustering with Speed☆20Updated 2 years ago
- Code and example of the D-SPIN framework☆23Updated last week
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆11Updated 9 months ago
- ACTIONet single-cell analysis framework☆42Updated 10 months ago
- ☆12Updated 2 years ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆21Updated 2 months ago
- bioinformatics plotting and tools☆59Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆53Updated last month
- CellDrift: temporal perturbation effects for single cell data☆13Updated 2 years ago
- Analyzing cellular niches in spatial transcriptomics data☆30Updated 8 months ago
- Code and documentation for the curation of cellxgene datasets☆47Updated this week
- Methods for visualization and analysis of spatially-resolved gene expression☆20Updated 2 months ago
- ☆34Updated 3 years ago
- Single cell proteomics data processing☆28Updated last month
- Spatially-resolved Transcriptomics via Epitope Anchoring☆19Updated last year
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆35Updated last year
- Reproducing all analyses and figures for the ASAP-seq paper☆29Updated 4 years ago
- ☆15Updated 10 months ago
- MALDIpy: a Python package for single-cell analysis of imaging mass spectrometry data (Cell Metabolism 2024)☆13Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 5 months ago
- Tutorials for multimodal omics data analysis☆16Updated 5 months ago