SlavovLab / SCP_recommendationsLinks
Initial recommendations for performing, benchmarking, and reporting single-cell proteomics experiments. The code is distributed under an MIT license.
☆12Updated 2 years ago
Alternatives and similar repositories for SCP_recommendations
Users that are interested in SCP_recommendations are comparing it to the libraries listed below
Sorting:
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆45Updated 3 months ago
- ☆62Updated last year
- ☆60Updated last year
- Multi-modal single cell analysis pipelines☆62Updated last month
- Code and documentation for the curation of cellxgene datasets☆52Updated last week
- ☆27Updated last year
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆53Updated 5 months ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆28Updated last year
- Analyzing cellular niches in spatial transcriptomics data☆34Updated last year
- repository containing analysis scripts and auxiliary files☆37Updated 5 years ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆22Updated 8 months ago
- Tutorials for multimodal omics data analysis☆19Updated 11 months ago
- Code and example of the D-SPIN framework☆24Updated 3 weeks ago
- MALDIpy: a Python package for single-cell analysis of imaging mass spectrometry data (Cell Metabolism 2024)☆17Updated last year
- Utilizing single-cell omics from patients tumor to predict response and resistance.☆71Updated 2 years ago
- ACTIONet single-cell analysis framework☆44Updated last year
- Using self-organizing maps for visualization and interpretation of cytometry data☆66Updated 2 years ago
- CellDrift: temporal perturbation effects for single cell data☆13Updated 3 years ago
- ☆27Updated 8 months ago
- ☆20Updated 11 months ago
- Single Cell Consensus Clustering with Speed☆20Updated 3 years ago
- A collection of tumour microenvironment single-cell RNA sequencing datasets for use in R and other pipelines.☆19Updated 6 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 7 months ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 3 years ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆34Updated 10 months ago
- SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.☆18Updated last year
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆58Updated 8 months ago
- Using BCR and expression for sequence embedding☆25Updated last month
- ☆15Updated 2 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago