SlavovLab / SCP_recommendationsLinks
Initial recommendations for performing, benchmarking, and reporting single-cell proteomics experiments. The code is distributed under an MIT license.
☆12Updated 2 years ago
Alternatives and similar repositories for SCP_recommendations
Users that are interested in SCP_recommendations are comparing it to the libraries listed below
Sorting:
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆45Updated 2 months ago
- Multi-modal single cell analysis pipelines☆62Updated 2 weeks ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆51Updated 4 months ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- ☆61Updated last year
- Code and example of the D-SPIN framework☆24Updated 2 weeks ago
- ☆60Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 6 months ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆22Updated 6 months ago
- ACTIONet single-cell analysis framework☆44Updated last year
- Tutorials for multimodal omics data analysis☆18Updated 10 months ago
- ☆15Updated 2 years ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆58Updated 7 months ago
- ☆15Updated 3 years ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆27Updated 11 months ago
- ☆27Updated 6 years ago
- CellDrift: temporal perturbation effects for single cell data☆13Updated 3 years ago
- ☆20Updated 10 months ago
- Code and documentation for the curation of cellxgene datasets☆50Updated last week
- Bayesian model for RNA velocity estimation of periodic manifolds☆34Updated last year
- Analyzing cellular niches in spatial transcriptomics data☆33Updated last year
- Utilizing single-cell omics from patients tumor to predict response and resistance.☆71Updated 2 years ago
- ☆97Updated last month
- MALDIpy: a Python package for single-cell analysis of imaging mass spectrometry data (Cell Metabolism 2024)☆14Updated last year
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆37Updated last week
- ☆25Updated last year
- Multiple trajectory alignment of time-series data☆13Updated 2 years ago
- Python package to generate high dimensional Flow Cytometry datasets using imputation by XGBoost regression☆11Updated last year
- SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.☆18Updated last year