Alternatives and similar repositories for rcellmarker:

Users that are interested in rcellmarker are comparing it to the libraries listed below

• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆23Updated 2 years ago
• UMCUGenetics / primary-met-wgs-comparison
  Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.
  ☆15Updated last year
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆26Updated 3 years ago
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆12Updated last year
• CICAMS-Liu-lab / ECGEA
  ☆17Updated 4 years ago
• wenweixiong / MARVEL
  ☆45Updated 6 months ago
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• dbrg77 / ISSAAC-seq
  ☆16Updated last year
• kaifuchenlab / MEBOCOST
  ☆14Updated 8 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆39Updated 11 months ago
• ChongJenniferZhang / CLCA_WGS
  ☆24Updated last year
• quadbio / RNAseq_tutorial
  ☆22Updated 4 months ago
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆12Updated 2 years ago
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆12Updated 2 years ago
• yandgong307 / human_macrophage_project
  scripts for analyzing data of macrophage development in human
  ☆10Updated 5 years ago
• gxiaolab / scAllele
  ☆31Updated 9 months ago
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆32Updated 3 years ago
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆18Updated last year
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆28Updated 2 years ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 3 months ago
• SGDDNB / GeneSwitches
  Ordering gene-expression and functional events in single-cell experiments
  ☆21Updated 11 months ago
• lijxug / CSOmapR
  R package of CSOmap(developing
  ☆14Updated 2 years ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆20Updated 10 months ago
• lusystemsbio / NetAct
  Network construction Algorithm
  ☆20Updated 5 months ago
• BMILAB / scAPAtrap
  ☆16Updated last year
• kevlitchfield1 / CPI1000_paper
  ☆20Updated 4 years ago
• bjstewart1 / kidney_sc_immune
  Repository for scRNAseq study of human kidneys
  ☆15Updated 5 years ago
• olapuentesantana / easier_manuscript
  ☆15Updated 3 years ago
• YeoLab / Expedition
  Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data
  ☆11Updated 7 years ago