guokai8 / rcellmarker
Identify cell type based on cell markers for single cell squencing
☆10Updated 6 months ago
Alternatives and similar repositories for rcellmarker:
Users that are interested in rcellmarker are comparing it to the libraries listed below
- ☆18Updated 3 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆15Updated last year
- R package of CSOmap(developing☆14Updated 2 years ago
- ☆29Updated 4 months ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆12Updated last year
- ☆17Updated 3 years ago
- ☆15Updated 3 years ago
- ☆20Updated last year
- ☆45Updated 5 months ago
- Network construction Algorithm☆20Updated 4 months ago
- ☆31Updated 8 months ago
- ☆15Updated last year
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Correlation-Based Feature Selection for Single-Cell RNA Sequencing Data☆19Updated 2 years ago
- ☆15Updated 6 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆52Updated 3 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- Ordering gene-expression and functional events in single-cell experiments☆20Updated 10 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 10 months ago
- Analysis pipeline for our circSC manuscript☆12Updated 2 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆29Updated last month
- Network analysis for multi-omics☆13Updated 2 weeks ago
- ☆22Updated 2 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 2 months ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆18Updated last year
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Updated last year