Tchanders / NetworkInference.jl

Related projects: ⓘ

• Teichlab / MultiMAP
  MultiMAP for integration of single cell multi-omics
  ☆52Updated 10 months ago
• Tchanders / network_inference_tutorials
  ☆31Updated 5 years ago
• maclean-lab / RVAgene
  Recurrent Variational Auto gene encoder
  ☆20Updated last year
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆32Updated last week
• AllonKleinLab / PBA
  Population balance analysis
  ☆44Updated 5 years ago
• cailab-tamu / scTenifoldNet
  A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data
  ☆21Updated 2 years ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆38Updated last year
• dpeerlab / scKINETICS
  Code for scKINETICS (ISMB 2023)
  ☆20Updated 10 months ago
• swoodhouse / SCNS-Toolkit
  Single cell network synthesis toolkit
  ☆23Updated 3 years ago
• hmatsu1226 / SCODE
  SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation
  ☆41Updated 4 years ago
• saezlab / omnipath
  Python client for the OmniPath web service
  ☆37Updated 3 months ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆39Updated 5 years ago
• KrishnaswamyLab / scprep
  A collection of scripts and tools for loading, processing, and handling single cell data.
  ☆73Updated last year
• berenslab / umi-normalization
  Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…
  ☆41Updated 2 years ago
• zsteve / gWOT
  Global Waddington-OT
  ☆20Updated last month
• rargelaguet / scnmt_gastrulation
  scNMT-seq gastrulation
  ☆41Updated last year
• praneet1988 / Inferring-and-Visualizing-RNA-Velocity-in-Bulk-RNA-SEQ
  Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.
  ☆14Updated 4 years ago
• HaojiaWu / CellScopes.jl
  A Julia package for single cell and spatial data analysis
  ☆26Updated 2 weeks ago
• Murali-group / BoolODE
  Git Repo for simulating Boolean Models
  ☆32Updated 3 months ago
• cole-trapnell-lab / Scribe
  Regulatory networks with Direct Information
  ☆16Updated 4 years ago
• aertslab / arboreto
  A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
  ☆50Updated 5 months ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆75Updated 3 years ago
• jessica1338 / CSHMM-for-time-series-scRNA-Seq
  This is the code release for paper Continuous State HMMs for Modeling Time Series Single Cell RNA-Seq Data
  ☆22Updated 6 years ago
• hemberg-lab / D3E
  Discrete Distributional Differential Expression
  ☆22Updated 5 years ago
• lingfeiwang / findr
  Fast Inference of Networks from Directed Regulations
  ☆21Updated 9 months ago
• andreasottoriva / neutral-tumor-evolution
  Stochastic simulation of next-generation sequencing data from neutrally evolving tumors
  ☆10Updated 7 years ago
• cbg-ethz / scDEF
  Deep exponential families for single-cell data.
  ☆20Updated 2 weeks ago
• bioFAM / slalom
  ☆28Updated last year
• cbg-ethz / BnpC
  Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates
  ☆18Updated 2 months ago
• saezlab / corneto
  Unified knowledge-driven network inference from omics data
  ☆17Updated this week