Pipeline for the generation and simulation of personalized Flux Balance Analysis models
☆11Feb 14, 2021Updated 5 years ago
Alternatives and similar repositories for FBA-pipeline
Users that are interested in FBA-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset includi…☆18May 25, 2025Updated last year
- ☆12Jun 11, 2023Updated 3 years ago
- Analysis pipeline for CUT&TAG data☆23Sep 2, 2020Updated 5 years ago
- ☆18Dec 1, 2017Updated 8 years ago
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding☆14Oct 17, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- omics data analysis using clusterProfiler ;)☆15Jun 6, 2024Updated 2 years ago
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆32Sep 15, 2023Updated 2 years ago
- An R package for phenotype generation and association testing for phenome wide associations studies (PheWAS)☆14Jul 11, 2024Updated 2 years ago
- ☆16Apr 9, 2021Updated 5 years ago
- http://huttenhower.sph.harvard.edu/waafle☆24Jun 16, 2026Updated last month
- ☆19Dec 7, 2020Updated 5 years ago
- Code for the identification step for CSI-Microbes☆31Nov 25, 2024Updated last year
- HCC single cell analysis for Alvarez, Benhammou et al.☆20Apr 30, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A CLI-first skill package manager that AI agents can operate themselves.☆31Jul 17, 2026Updated last week
- ☆18May 12, 2023Updated 3 years ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated last year
- Discovery of biological sequence motifs in R☆28Dec 20, 2018Updated 7 years ago
- Reconstruction algorithms for Python☆26Oct 23, 2024Updated last year
- Toolbox package for organizing and working with TCGA data☆31Jul 2, 2026Updated 3 weeks ago
- SNP effect predictor☆11Feb 2, 2016Updated 10 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆18Jul 15, 2025Updated last year
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆18Nov 13, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Implements the blood brain barrier score described in: J. Med. Chem. 2019, 62, 21, 9824-9836 (https://doi.org/10.1021/acs.jmedchem.9b0122…☆14Sep 27, 2020Updated 5 years ago
- Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence☆11Jun 24, 2015Updated 11 years ago
- K-RET: Knowledgeable Biomedical Relation Extraction System☆11Feb 22, 2025Updated last year
- Awesome-AI-Meets-Biology is a collection of state-of-the-art, novel, exciting LLMs and agents on biomedical and bioinformatic fields.☆36May 28, 2026Updated 2 months ago
- Restructuring of Essential Oil Database☆13Sep 10, 2019Updated 6 years ago
- ☆11Jan 30, 2025Updated last year
- A Comprehensive R Package For Analyzing Quantitative Phosphoproteomics Data☆13Nov 30, 2022Updated 3 years ago
- PaNeV: an R package for a pathway-based network visualization☆10Aug 25, 2025Updated 11 months ago
- Causal Mediation analysis☆10Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- RNA dependent RNA Polymerase Palmprint Analysis☆13Aug 1, 2024Updated last year
- ☆93Sep 3, 2024Updated last year
- ☆11Apr 11, 2017Updated 9 years ago
- model-based understanding of single-cell CRISPR screening☆29Dec 13, 2024Updated last year
- PhosIDN: an integrated deep neural network for improving protein phosphorylation site prediction by combining sequence and protein–protei…☆12Nov 30, 2020Updated 5 years ago
- ☆20Apr 8, 2025Updated last year
- python based queries for the proteomesoflife neo4j network database☆14Jun 17, 2020Updated 6 years ago