Alternatives and similar repositories for FBA-pipeline

Users that are interested in FBA-pipeline are comparing it to the libraries listed below

• lydiaMyr / ImmuCellAI
  ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset includi…
  ☆15Updated 7 months ago
• OSCA-source / OSCA.advanced
  Advanced steps of the OSCA book
  ☆14Updated last month
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆48Updated last year
• CyrilLagger / scDiffCom
  Difference in Intercellular Communication from scRNA-seq data
  ☆23Updated 2 months ago
• QuKunLab / COVID-19
  The R/Python scripts for the analysis of single-cell RNA-seq data from COVID-19 patients
  ☆10Updated 5 years ago
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆30Updated 5 years ago
• Tuteja-Lab / TissueEnrich
  R package for tissue-specific gene enrichment
  ☆15Updated 3 years ago
• rosedu1 / deconvSeq
  deconvolution for RNAseq and bisulfite sequencing
  ☆11Updated 5 years ago
• satijalab / Mixscale
  ☆23Updated 3 months ago
• showteeth / GEfetch2R
  GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools
  ☆39Updated this week
• paulgeeleher / pRRophetic
  R package
  ☆21Updated 2 years ago
• Gibbsdavidl / Immune-Subtype-Clustering
  This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".
  ☆18Updated 6 years ago
• xushiabbvie / TDtool
  ☆13Updated last year
• zdq0808 / Blasso
  Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers
  ☆21Updated 3 years ago
• XSLiuLab / tumor-immunogenicity-score
  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
  ☆33Updated 4 years ago
• Shamir-Lab / INTEND
  INTEND (IntegratioN of Transcriptomic and EpigeNomic Data), a novel algorithm for integrating gene expression and DNA methylation dataset…
  ☆12Updated 3 years ago
• lydiaMyr / ImmuCellAI-mouse
  ☆10Updated 7 months ago
• XSLiuLab / PC_CNA_signature
  Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/
  ☆13Updated 4 years ago
• Katsevich-Lab / sceptre
  An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.
  ☆35Updated 4 months ago
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆14Updated 2 years ago
• dbdimitrov / BingleSeq
  BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses
  ☆22Updated 4 years ago
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆27Updated 5 years ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆22Updated last year
• icbi-lab / immune_deconvolution_benchmark
  Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…
  ☆44Updated 5 years ago
• Core-Bioinformatics / ClustAssess
  Tools for assessing clustering robustness
  ☆28Updated 3 weeks ago
• hancockinformatics / pathlinkR
  Analysis and visualization of RNA-Seq results
  ☆30Updated last week
• Henikoff / scCUT-Tag
  ☆18Updated 2 years ago
• dieterich-lab / CircTest
  CircRNA testing and ploting R package
  ☆10Updated 5 years ago
• tianshilu / QBRC-Neoantigen-Pipeline
  QBRC Neoantigen calling pipeline with CSiN calculation embedded
  ☆25Updated 3 years ago
• ShixiangWang / gcap
  GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…
  ☆20Updated 4 months ago