Pipeline for the generation and simulation of personalized Flux Balance Analysis models
☆11Feb 14, 2021Updated 5 years ago
Alternatives and similar repositories for FBA-pipeline
Users that are interested in FBA-pipeline are comparing it to the libraries listed below
Sorting:
- ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset includi…☆15May 25, 2025Updated 9 months ago
- Analysis pipeline for CUT&TAG data☆23Sep 2, 2020Updated 5 years ago
- ☆17Apr 9, 2021Updated 4 years ago
- ☆19Apr 8, 2025Updated 11 months ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆17Apr 15, 2025Updated 10 months ago
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding☆14Oct 17, 2023Updated 2 years ago
- An R package for phenotype generation and association testing for phenome wide associations studies (PheWAS)☆15Jul 11, 2024Updated last year
- ☆18Dec 1, 2017Updated 8 years ago
- ☆18May 12, 2023Updated 2 years ago
- http://huttenhower.sph.harvard.edu/waafle☆23Feb 26, 2026Updated last week
- Difference in Intercellular Communication from scRNA-seq data☆24Oct 14, 2025Updated 4 months ago
- ☆18Dec 7, 2020Updated 5 years ago
- Correlation-Based Feature Selection for Single-Cell RNA Sequencing Data☆20Jul 19, 2022Updated 3 years ago
- Discovery of biological sequence motifs in R☆29Dec 20, 2018Updated 7 years ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆22Jul 6, 2023Updated 2 years ago
- Reconstruction algorithms for Python☆26Oct 23, 2024Updated last year
- ☆62Dec 8, 2025Updated 3 months ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆30Jan 1, 2025Updated last year
- ☆36Nov 26, 2025Updated 3 months ago
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆29Sep 15, 2023Updated 2 years ago
- ☆71May 28, 2025Updated 9 months ago
- DriverPower☆26Jan 18, 2025Updated last year
- Code for the identification step for CSI-Microbes☆31Nov 25, 2024Updated last year
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆71Apr 12, 2024Updated last year
- ☆39Jan 19, 2026Updated last month
- software package for integrative genetic association analysis☆35Jul 8, 2023Updated 2 years ago
- ☆40Jul 14, 2023Updated 2 years ago
- Visualizing SingleCell data Using GGplot2☆37Sep 28, 2024Updated last year
- We apply deep learning approaches to accurately identify 30 common bacterial pathogens, achieving an average isolate-level accuracy of ov…☆13Feb 27, 2021Updated 5 years ago
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated last year
- R package for Bioconductor submission☆38Dec 8, 2022Updated 3 years ago
- ☆10May 31, 2022Updated 3 years ago
- ADS1263 bare-metal driver for MCUs☆11May 17, 2018Updated 7 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆84Apr 21, 2025Updated 10 months ago
- ☆89Sep 3, 2024Updated last year
- ☆43Nov 8, 2024Updated last year
- ☆36Apr 2, 2025Updated 11 months ago
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencing☆35May 14, 2020Updated 5 years ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆54Jan 21, 2026Updated last month