saezlab / cosmosR
COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets.
☆59Updated 6 months ago
Alternatives and similar repositories for cosmosR:
Users that are interested in cosmosR are comparing it to the libraries listed below
- R package for analysing proteomics data☆49Updated last year
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆48Updated 5 years ago
- An S3 data object and framework for common quantitative proteomic analyses☆40Updated 2 weeks ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- R package for the analysis of single-cell immune repertoires☆42Updated last week
- A tool for large scale omics datasets evaluation☆24Updated last year
- DEqMS is a tool for quantitative proteomic analysis☆23Updated 2 months ago
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆23Updated 2 months ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆24Updated 8 months ago
- ☆57Updated 7 months ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆57Updated last year
- Methods for label-free mass spectrometry proteomics☆14Updated last year
- Code related to the Celligner manuscript☆45Updated 4 years ago
- Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/☆18Updated last year
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 8 months ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆34Updated this week
- A Comprehensive R Package For Analyzing Quantitative Phosphoproteomics Data☆12Updated 2 years ago
- A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like pipeline toolkit for the R la…☆10Updated 4 months ago
- tidymass☆54Updated last year
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆30Updated 2 years ago
- Bayesian network plot for the enrichment analysis results☆62Updated 4 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆44Updated last year
- ☆26Updated 3 months ago
- Signac☆24Updated last year
- ☆18Updated 3 years ago
- ☆46Updated last month
- ☆57Updated 4 years ago
- collection of notebooks with different cytoscape workflows☆49Updated last year
- LIMMA (an empirical Bayes method) pipeline for two group comparison in a proteomic experiment☆26Updated last year