SydneyBioX / scReClassifyLinks
Post hoc cell type classification of single-cell RNA-sequencing data.
☆10Updated 4 years ago
Alternatives and similar repositories for scReClassify
Users that are interested in scReClassify are comparing it to the libraries listed below
Sorting:
- ☆30Updated 3 years ago
- Hierarchical classification of cells☆26Updated last year
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Updated 3 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 5 years ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Updated last week
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 4 months ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆47Updated last year
- Selecting the optimal trajectory inference based on a given dataset and user input 🔮☆19Updated 5 years ago
- Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.☆23Updated 7 years ago
- R package for specialised analysis of single cell data☆39Updated 3 years ago
- 10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC☆24Updated 3 years ago
- An R package for visualising cell-cell interactions☆43Updated last year
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- Linear trajectory inference for single-cell RNA-seq☆61Updated last year
- ☆48Updated 7 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47Updated 2 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆29Updated 3 weeks ago
- ☆43Updated 4 years ago
- An R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database into a Seurat object.☆26Updated 2 years ago
- Collection of cell type reference datasets.☆61Updated last year
- Explore and share your scRNAseq clustering results☆50Updated 2 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆42Updated 4 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆37Updated 2 years ago
- A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware t…☆17Updated 11 months ago
- SPATA Package for spatial gene expression analysis☆21Updated 3 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. This is a novel R package of the RaceID3 and S…☆43Updated 11 months ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆35Updated last year