statdivlab / radEmuLinks
☆56Updated this week
Alternatives and similar repositories for radEmu
Users that are interested in radEmu are comparing it to the libraries listed below
Sorting:
- BEAV: Bacterial Element Annotation reVamped☆66Updated 8 months ago
- ☆17Updated 2 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆86Updated 11 months ago
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆49Updated last year
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 2 weeks ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last month
- ☆44Updated 3 weeks ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆37Updated last week
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆38Updated last week
- Speedy versions of phyloseq functions☆48Updated last year
- Metagenomics-related extended functionalities to samtools☆21Updated 2 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Compare different differential abundance and expression methods☆50Updated 3 years ago
- ☆52Updated 2 weeks ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 5 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆61Updated 10 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated 2 weeks ago
- GraftM - Rapid community profiles from metagenomes☆45Updated 11 months ago
- Plot microbiome time series in parallel☆26Updated last year
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- ☆39Updated last year
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- Protocol for finding informative protein families and then using them to score metagenomic sets.☆10Updated 3 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆19Updated 8 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆67Updated last year
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 8 months ago
- SHallow shOtGUN profiler☆54Updated 3 years ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆62Updated 2 years ago