statdivlab / radEmu
☆51Updated this week
Alternatives and similar repositories for radEmu:
Users that are interested in radEmu are comparing it to the libraries listed below
- Compare different differential abundance and expression methods☆50Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated last week
- ☆17Updated 2 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆63Updated last year
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆27Updated 6 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆70Updated 2 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated last year
- A set of R scripts for the analysis of microbial profiles☆41Updated 7 months ago
- ☆47Updated 9 months ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆70Updated 3 weeks ago
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆45Updated 10 months ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆11Updated 2 years ago
- Speedy versions of phyloseq functions☆46Updated 8 months ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆27Updated last year
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆53Updated 4 months ago
- Metagenomics-related extended functionalities to samtools☆19Updated last year
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 4 years ago
- ☆14Updated this week
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆50Updated 2 years ago
- SHallow shOtGUN profiler☆54Updated 2 years ago
- ☆29Updated 10 months ago
- functions for analyzing phyloseq data☆26Updated last week
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 2 months ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- Plot microbiome time series in parallel☆24Updated last year
- ☆20Updated 4 years ago
- A robust and fast clustering method for amplicon-based studies☆31Updated last year
- BEAV: Bacterial Element Annotation reVamped☆60Updated 2 months ago