adlape95 / SpaghettiLinks
Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing
☆19Updated last year
Alternatives and similar repositories for Spaghetti
Users that are interested in Spaghetti are comparing it to the libraries listed below
Sorting:
- Predict plasmids from uncorrected long read data☆41Updated last month
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 7 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 3 years ago
- A Nextflow full-length 16S profiling pipeline for ONT reads☆25Updated 2 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- ☆37Updated 3 years ago
- Intra-species bacterial contamination detection☆25Updated 9 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆23Updated 2 years ago
- Automated strain separation of low-complexity metagenomes☆53Updated 4 years ago
- Discover and annotate the virome☆54Updated last month
- Bacterial GWAS analysis☆46Updated last month
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆47Updated last month
- workflows for offline analysis of 16S rRNA Nanopore data☆16Updated 2 years ago
- Mapping-Assisted Targeted-Assembly for Metagenomics☆24Updated 8 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated this week
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆31Updated this week
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Gene-flank analysis tool☆34Updated 11 months ago
- Calculate assocations between genes and traits☆29Updated 9 months ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- ☆18Updated 3 years ago
- Long read metagenomics practical at EBAME18☆18Updated 7 years ago