vmaffei / dada2_to_picrust
Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)
☆19Updated 6 years ago
Alternatives and similar repositories for dada2_to_picrust:
Users that are interested in dada2_to_picrust are comparing it to the libraries listed below
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆30Updated last year
- functions for analyzing phyloseq data☆26Updated last month
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- Speedy versions of phyloseq functions☆47Updated 11 months ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 years ago
- 16S taxonomy assignment using an ecosystem-specific database.☆16Updated 2 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated 10 months ago
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- ☆13Updated 5 years ago
- Tools for visualising microbial community amplicon data☆67Updated 10 months ago
- Analysis of Composition of Microbiomes☆11Updated 8 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 2 months ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- A microbiome analysis toolkit for R☆22Updated last year
- Handy tools for Microbiome analysis in R☆18Updated 5 years ago
- accessory functions for processing microbial community data☆12Updated 2 years ago
- Set of useful functions and scripts for analyzing amplicon Miseq data.☆17Updated 8 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- ☆23Updated 6 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 7 months ago
- Rarefaction scripts☆17Updated last year
- R package for microbial pangenomics☆23Updated 2 years ago
- Working with the outputs of sourmash in R☆26Updated last year
- workflows for offline analysis of 16S rRNA Nanopore data☆13Updated last year
- Repo for a Microbiome Protocol☆9Updated 6 years ago
- A robust and fast clustering method for amplicon-based studies☆31Updated last year