Alternatives and similar repositories for 16S-rDNA-V3-V4

Users that are interested in 16S-rDNA-V3-V4 are comparing it to the libraries listed below

• grimmlab / MicrobiomeBestPracticeReview
  Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
  ☆121Updated last year
• waldronlab / lefser
  R implementation of the LEfSe method
  ☆59Updated 4 months ago
• nearinj / Comparison_of_DA_microbiome_methods
  ☆57Updated last year
• GRONINGEN-MICROBIOME-CENTRE / Groningen-Microbiome
  Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…
  ☆58Updated 3 months ago
• biobakery / Maaslin2
  MaAsLin2: Microbiome Multivariate Association with Linear Models
  ☆145Updated 9 months ago
• david-barnett / microViz
  R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
  ☆118Updated last month
• microbiota / Zhang2019NBT
  Scripts for stat and plot figures in rice microbiome paper
  ☆19Updated 6 years ago
• xia-lab / MicrobiomeAnalystR
  A companion R package for the MicrobiomeAnalyst web server
  ☆127Updated 2 months ago
• FrederickHuangLin / ANCOMBC
  Differential abundance (DA) and correlation analyses for microbial absolute abundance data
  ☆125Updated 3 months ago
• lch14forever / microbiomeViz
  Visualize microbiome data with black magic ggtree
  ☆68Updated 5 years ago
• FrederickHuangLin / ANCOM-Code-Archive
  Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…
  ☆63Updated 3 years ago
• YongxinLiu / Zhang2019NBT
  Scripts for stat and plot figures in rice microbiome paper
  ☆31Updated 10 months ago
• YongxinLiu / Liu2020ProteinCell
  Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome
  ☆41Updated 5 years ago
• SegataLab / lefse
  ☆85Updated last year
• biobakery / biobakery_workflows
  bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…
  ☆117Updated 3 months ago
• YongxinLiu / Zhang2018SCLS
  Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)
  ☆32Updated 6 years ago
• microsud / Tools-Microbiome-Analysis
  A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
  ☆116Updated 2 years ago
• cafferychen777 / MicrobiomeStat
  Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
  ☆44Updated this week
• microbiome / OMA
  Orchestrating Microbiome Analysis
  ☆101Updated last week
• cafferychen777 / ggpicrust2
  Make Picrust2 Output Analysis and Visualization Easier
  ☆155Updated this week
• HCBravoLab / metagenomeSeq
  Statistical analysis for sparse high-throughput sequencing
  ☆69Updated 8 months ago
• yiluheihei / microbiomeMarker
  R package for microbiome biomarker discovery
  ☆188Updated 6 months ago
• jbisanz / qiime2R
  Import qiime2 artifacts to R
  ☆173Updated 8 months ago
• microbiome / mia
  Microbiome analysis
  ☆53Updated this week
• YuLab-SMU / MicrobiotaProcess
  A comprehensive R package for deep mining microbiome
  ☆191Updated 2 months ago
• sib-swiss / first-steps-with-R-training
  repository of the 2-day course "First steps with R in Life Sciences" from SIB-training
  ☆49Updated last month
• microbiome-resources / Microbiome_analysis_in-_R
  ☆16Updated 2 years ago
• zellerlab / crc_meta
  Code and analysis results for the CRC shotgun meta-analysis
  ☆39Updated 2 years ago
• twbattaglia / MicrobeDS
  A repository for large-scale microbiome datasets, formatted for phyloseq
  ☆38Updated last year
• jaeyunsung / GMHI_2020
  Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profili…
  ☆35Updated 4 years ago