anw-sh / silva-138_classifiers
Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes
☆13Updated 7 months ago
Alternatives and similar repositories for silva-138_classifiers:
Users that are interested in silva-138_classifiers are comparing it to the libraries listed below
- ☆49Updated 4 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆57Updated 3 years ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆43Updated 3 years ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆62Updated 4 years ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆49Updated 10 months ago
- 🍄 Qiime2 ITS classifiers for the UNITE database☆36Updated 6 months ago
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆30Updated last year
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated 5 months ago
- Reorients assembled microbial sequences☆107Updated 2 weeks ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆59Updated 4 months ago
- A pipeline for nanopore long-read metagenomic analysis.☆26Updated last month
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆28Updated 4 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆71Updated last year
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 3 years ago
- Horizontal gene transfer (HGT) identification pipeline☆56Updated last year
- ☆48Updated 9 months ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆63Updated 5 months ago
- fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads☆44Updated 6 months ago
- code repo for mobileOG-db☆33Updated last week
- Metatranscriptomics Tutorial☆60Updated last year
- ☆28Updated last year
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆88Updated last year
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆72Updated 4 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆69Updated last month
- MicrobiomeReview☆11Updated last year
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆12Updated 2 months ago
- ☆41Updated last week
- A toolbox for comparative genomics.☆100Updated 3 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 7 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆42Updated last year