anw-sh / silva-138_classifiersLinks
Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes
☆13Updated 11 months ago
Alternatives and similar repositories for silva-138_classifiers
Users that are interested in silva-138_classifiers are comparing it to the libraries listed below
Sorting:
- ☆49Updated 4 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆60Updated 4 years ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆46Updated 3 years ago
- Horizontal gene transfer (HGT) identification pipeline☆58Updated 2 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆47Updated 4 years ago
- 🍄 Qiime2 ITS classifiers for the UNITE database☆39Updated 2 months ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆30Updated 5 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated 9 months ago
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆32Updated last year
- ☆29Updated last week
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆68Updated 4 years ago
- Metatranscriptomics Tutorial☆62Updated last year
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆70Updated 9 months ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆54Updated 2 months ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆46Updated 2 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆121Updated last year
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆76Updated 3 months ago
- code repo for mobileOG-db☆37Updated last week
- A pipeline for nanopore long-read metagenomic analysis.☆37Updated last week
- fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads☆47Updated 10 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆73Updated 2 years ago
- Generating iToL annotations from Spreadsheet or CSV files☆103Updated 5 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆66Updated last month
- ☆50Updated last year
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆72Updated 5 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆66Updated last year
- Find endogenous viral elements in genomes☆13Updated 4 months ago
- Reorients assembled microbial sequences☆121Updated 2 months ago
- A toolbox for comparative genomics.☆103Updated 4 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆58Updated last month