anw-sh / silva-138_classifiersLinks
Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes
☆16Updated last year
Alternatives and similar repositories for silva-138_classifiers
Users that are interested in silva-138_classifiers are comparing it to the libraries listed below
Sorting:
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated last year
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆80Updated 10 months ago
- Horizontal gene transfer (HGT) identification pipeline☆63Updated 2 years ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆49Updated 4 years ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat …☆62Updated 7 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆99Updated 6 months ago
- ☆50Updated 4 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆78Updated last month
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- A pipeline for nanopore long-read metagenomic analysis.☆47Updated 5 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆232Updated 7 months ago
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆32Updated 2 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆87Updated last year
- ☆147Updated last year
- Generating iToL annotations from Spreadsheet or CSV files☆106Updated 5 years ago
- Metatranscriptomics Tutorial☆64Updated 2 years ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆70Updated 5 years ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆140Updated 2 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆78Updated 2 years ago
- Find endogenous viral elements in genomes☆17Updated last month
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆136Updated 2 years ago
- ☆117Updated last year
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆85Updated 3 months ago
- 🍄 Qiime2 ITS classifiers for the UNITE database☆45Updated 2 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆48Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆193Updated last month
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- fast phage annotation program☆182Updated 3 weeks ago
- ☆69Updated this week