anw-sh / silva-138_classifiersLinks
Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes
☆14Updated last year
Alternatives and similar repositories for silva-138_classifiers
Users that are interested in silva-138_classifiers are comparing it to the libraries listed below
Sorting:
- ☆49Updated 4 years ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆47Updated 3 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆60Updated 4 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆86Updated 11 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆96Updated 3 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆74Updated 6 months ago
- Horizontal gene transfer (HGT) identification pipeline☆61Updated 2 years ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆68Updated 4 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆76Updated 2 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆217Updated 3 months ago
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆32Updated last year
- 🍄 Qiime2 ITS classifiers for the UNITE database☆42Updated 3 months ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆30Updated 5 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆122Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆131Updated 2 months ago
- fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads☆49Updated 11 months ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆47Updated 4 years ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆56Updated 4 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆67Updated 2 months ago
- ☆109Updated last year
- A toolbox for comparative genomics.☆104Updated 4 years ago
- code repo for mobileOG-db☆39Updated last month
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆44Updated 2 years ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆32Updated this week
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆72Updated 3 weeks ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆72Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆153Updated last week
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆47Updated 3 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆84Updated 2 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆152Updated 3 months ago